DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Atad2b

DIOPT Version :10

Sequence 1:NP_524469.2 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001349278.1 Gene:Atad2b / 320817 MGIID:2444798 Length:1457 Species:Mus musculus


Alignment Length:452 Identity:138/452 - (30%)
Similarity:219/452 - (48%) Gaps:75/452 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GQNQSAQGGAGEKKDDKDKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLK-LLKLE 65
            |:.:.:|...|:.:.::.:.::.:.|...|..|...|.:.|      |.|..|.:.|.. |..:.
Mouse   257 GEEEESQEEDGDIEVEEAEGEENDRPYNLRQRKTVDRYQAP------PIVPAHQKKRENTLFDIH 315

  Fly    66 RI---KDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG 127
            |.   :.::..:...|.:.:.....:|:.|..:||                          :...
Mouse   316 RSPARRSHIRRKKHAIHSSDTTSSDEERFERRKSK--------------------------SMAR 354

  Fly   128 SEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQ 192
            :.:....::|    :.|...|.:|..:|.  ||....|.||    |.::|:.:  :..||||...
Mouse   355 ARNRCLPMNF----RAEDLASGILRERVK--VGASLADVDP----MNIDKSVR--FDSIGGLSHH 407

  Fly   193 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS------ATFLRVVG 251
            |..:||.|..||.:||.:|:..|:||:|.:.||||||||||:|:|:||:.|      |.|:| .|
Mouse   408 IHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMR-KG 471

  Fly   252 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 316
            ::.:.|::|:..:.:|.||..|....|||:|.||||.:...|..........|..|:|.|   :|
Mouse   472 ADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLAL---MD 533

  Fly   317 GFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMT-LAEDVNLS 380
            |.|:||::.||.||||::::||||.||||.||:..|.|||::.::.|..|||.... ...|..|.
Mouse   534 GLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQRARKHILQIHTRDWNPKLSDAFLG 598

  Fly   381 ELIMAKDDLSGADIKAICTEAGLMALRER-----------RMKVTN-----EDFKKSKESVL 426
            ||........||||||:||||.|.|||.|           ::.||:     .||..:.::::
Mouse   599 ELAEKCVGYCGADIKALCTEAALTALRRRYPQIYASSHKLQLDVTSIVLSAHDFYHAMQNIV 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_524469.2 PTZ00361 1..439 CDD:185575 138/452 (31%)
Atad2bNP_001349278.1 RecA-like_Yta7-like 400..569 CDD:410925 76/172 (44%)
AAA_lid_3 594..634 CDD:465537 19/39 (49%)
P-loop containing Nucleoside Triphosphate Hydrolases 758..894 CDD:476819
COG5076 840..>1085 CDD:227408
Bromo_AAA 959..1070 CDD:99957
Blue background indicates that the domain is not in the aligned region.

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