DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Rpt4

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster


Alignment Length:378 Identity:164/378 - (43%)
Similarity:241/378 - (63%) Gaps:16/378 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGN-----LEEIIDD 117
            |.|||:.:.|:..|..:.|.|::..:|..:.|         :||:.. .|||.     |:::.:|
  Fly    21 RKKLLEHKEIEGRLKEKREEIKDLTKLYDKSE---------NDLKAL-QSVGQIVGEVLKQLTED 75

  Fly   118 NHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQET 182
            ...:.:|: |..:.|.....:||.:|:.|..|.|:.....::..|..:.||:|..|..|.....|
  Fly    76 KFIVKATN-GPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVT 139

  Fly   183 YADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 247
            |:.||||..||:|::|.:||||.:||.:..:||.||||.:|||||||||||||:|||:|..|.||
  Fly   140 YSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFL 204

  Fly   248 RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELL 312
            :||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||:|.:|:...:..:||||||::|||
  Fly   205 KVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 269

  Fly   313 NQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDV 377
            ||:|||||.|.||:||||||.:||||||:||||:|||||.|||:|:.:..|..||..::....::
  Fly   270 NQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEI 334

  Fly   378 NLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 430
            :...::...|:.:|||::.:||||||.|:|..|..|..|||.|:...|...||
  Fly   335 DYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKK 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 164/378 (43%)
Rpt4NP_572308.3 RPT1 13..395 CDD:224143 164/378 (43%)
AAA 179..311 CDD:278434 82/131 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445423
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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