DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Katnal2

DIOPT Version :10

Sequence 1:NP_524469.2 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001419361.1 Gene:Katnal2 / 307253 RGDID:1564708 Length:537 Species:Rattus norvegicus


Alignment Length:447 Identity:133/447 - (29%)
Similarity:208/447 - (46%) Gaps:74/447 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KDKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQVTPHTRCR-----LKLLKLERIKDYLMME--- 74
            |....:.|..|.:|.|.|.:|... |....||::. |.:.|     :|....:.:|::...|   
  Rat    91 KKASDQVENNISSRSGGKNKRLTN-DNCQNLPKIY-HQKSRPKTSTVKTGDTKSVKEHPKQESVT 153

  Fly    75 ------DEFIRNQERLKPQ--DEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHY 131
                  .:|..|..::...  :||....|.::.|.||          ::.|  ||...:  ||:.
  Rat   154 NAQAESSDFGLNISKIHKDSPEEKAHPRRGQIIDFRG----------LLTD--AIKGAT--SEYA 204

  Fly   132 VSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMK---LEKAPQETYADIGGLDTQI 193
            ::..      :..|..|..|...:.|.:|:.|:..:....|.:   |.. |...:.||.|||...
  Rat   205 LNTF------ECNPDPSERLLKPLSAFIGMNSEMRELAAVVSRDIYLHN-PNIKWNDIIGLDAAK 262

  Fly   194 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 258
            |.:||:|..|:.:|:.:..: :.|.||::|||||||||||||||||.:...||..:..|.::.|:
  Rat   263 QLVKEAVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKW 326

  Fly   259 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELLNQLDGFDSRG 322
            .||..||||.||.:|..||||.:|:||:::|.::| ....|||.| ..|...|||.|:||.....
  Rat   327 RGDSEKLVRVLFELARYHAPSTIFLDELESVMSQR-GMVPGGEHEGSLRMKTELLVQMDGLARSE 390

  Fly   323 D-VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIH-------TSRMTLAEDVNL 379
            | |.|:.|:|....||.|::|  |::::|...||.::. |:....|       ...:.|...:..
  Rat   391 DLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSQEA-RQAMIYHWLPPVSKNHALELRTQLEY 452

  Fly   380 SELIMAKDDLSGADIKAICTEAGLMALRE------------------RRMKVTNEDF 418
            |.|....:..||:|||.:|.||.:..:|:                  :...||.|||
  Rat   453 SVLSQETEGYSGSDIKLVCREAAMRPVRKIFNVLENHQSESSNLLGIQLDTVTTEDF 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_524469.2 PTZ00361 1..439 CDD:185575 133/447 (30%)
Katnal2NP_001419361.1 LisH 25..55 CDD:128913
RPT1 184..525 CDD:440835 113/352 (32%)
RecA-like_VPS4-like 255..419 CDD:410917 74/167 (44%)
Blue background indicates that the domain is not in the aligned region.

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