DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Katnal1

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001006957.1 Gene:Katnal1 / 288449 RGDID:1359252 Length:488 Species:Rattus norvegicus


Alignment Length:405 Identity:127/405 - (31%)
Similarity:199/405 - (49%) Gaps:65/405 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 LKLLKLERIKDY-LMMEDEFIRN----------QERLKPQDEK-NEEERSKVDDL-RGTPMSVGN 110
            |:..|:::..|: :...||..|:          :.|..||..: |.|.|....|: .|....||.
  Rat    73 LESFKMDKPPDFPVSCRDEPFRDPAVWPPPVPAEHRAPPQIRRPNREVRPLRKDMGAGARGLVGR 137

  Fly   111 LEEIIDDNHAIVSTSVGSEHYVSILSFVDKD------------QLEPGCSVLLNHKVHAVVGVLS 163
            ..:|...:.|               :..|||            .::.|.|   :.::....|. .
  Rat   138 AHQISKSDKA---------------ASRDKDYRARGRDDKARKNMQDGAS---DGEIPKFDGA-G 183

  Fly   164 DDTDPMVTVMK---LEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILY 224
            .|.| :|..::   :.:.|...:.||..|:...:.::|:|.||:..|::::  ||:.| |||::.
  Rat   184 YDKD-LVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMV 245

  Fly   225 GPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 289
            ||||||||:||||||.:...||..|..|.|..||.|:..||||.||.:|..:||:.:||||||::
  Rat   246 GPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSI 310

  Fly   290 GTKRYDSNSGGEREI-QRTMLELLNQLDGF-------DSRGDVKVIMATNRIETLDPALIRPGRI 346
            .::|..|:   |.|. :|...|||.|:||.       |....|.|:.|||....:|.||.|  |:
  Rat   311 CSRRGTSD---EHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RL 370

  Fly   347 DRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRM 411
            :::|..|||..|.:..:..|....:.|..|::|.::....:..|||||..||.:|.|||:|.|..
  Rat   371 EKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRIN 435

  Fly   412 KVTNEDFKK-SKESV 425
            .::.|:.:. |||.:
  Rat   436 GLSPEEIRALSKEEL 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 127/405 (31%)
Katnal1NP_001006957.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..179 10/68 (15%)
RecA-like_KTNA1 207..376 CDD:410930 74/175 (42%)
AAA_lid_3 400..444 CDD:407720 16/43 (37%)
Vps4_C <448..486 CDD:401324 1/3 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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