DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and rpt2

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_595480.1 Gene:rpt2 / 2540939 PomBaseID:SPBC4.07c Length:448 Species:Schizosaccharomyces pombe


Alignment Length:449 Identity:331/449 - (73%)
Similarity:387/449 - (86%) Gaps:11/449 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGQNQS------AQGGAGE-KKDDKDKKKKYEPPIPTRVGKKKRRAK-GPDAAMKLPQVTPHTRC 57
            |||.||      ..|..|: |||.|..|.|||||:|||.|::|::|: ||||:.|||.|.|.|||
pombe     1 MGQAQSGNFSNFGDGANGDNKKDQKKDKPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRC 65

  Fly    58 RLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 122
            ||:|||::||.|:|:||:|:::||||||||||:.:|||::||::||||||||.|||||||:||||
pombe    66 RLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIV 130

  Fly   123 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIG 187
            ||: |.|:||||:||||||.|||||||||:||..::||:|.||||||:.||||:|||.|:|||||
pombe   131 STA-GPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIG 194

  Fly   188 GLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 252
            ||::|||||||:|||||||||.||||||||||||||||.||||||||||||||||||||||||||
pombe   195 GLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGS 259

  Fly   253 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG 317
            |||||||||||:|||:||..||||:|||||||||||:||||||:.||.|||||||||||||||||
pombe   260 ELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDG 324

  Fly   318 FD-SRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSE 381
            || |:.|:|||||||||..|||||||||||||||.|..|||.|||:|||||||:|.|.|||||.|
pombe   325 FDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEE 389

  Fly   382 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE-GLYL 439
            ||..|||||||:||||.:||||:|||||||:|..:||::::|.||..|.||.|. |||:
pombe   390 LIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAGGLYI 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 330/447 (74%)
rpt2NP_595480.1 PTZ00361 1..448 CDD:185575 330/447 (74%)
Prot_ATP_ID_OB 115..>167 CDD:293059 39/52 (75%)
AAA 228..361 CDD:278434 115/132 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 226 1.000 Domainoid score I523
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2095
Inparanoid 1 1.050 648 1.000 Inparanoid score I128
OMA 1 1.010 - - QHG54128
OrthoFinder 1 1.000 - - FOG0002872
OrthoInspector 1 1.000 - - oto100406
orthoMCL 1 0.900 - - OOG6_101477
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R998
SonicParanoid 1 1.000 - - X2230
TreeFam 1 0.960 - -
1413.860

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