DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Katna1

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_035965.2 Gene:Katna1 / 23924 MGIID:1344353 Length:493 Species:Mus musculus


Alignment Length:429 Identity:133/429 - (31%)
Similarity:195/429 - (45%) Gaps:93/429 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PIPTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKN 91
            |:|   |.:||::.      :.....||:.....:::..|.....:..|.....:.|.|.:..|.
Mouse   110 PLP---GPRKRQSS------QHSDPKPHSNRPSTVVRAHRPSPQNLHNDRGKAVRSREKKEQSKG 165

  Fly    92 EEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVH 156
            .||::|:      |.:|...|          :.......|       |||.:|            
Mouse   166 REEKNKL------PAAVTEPE----------ANKFDGTGY-------DKDLVE------------ 195

  Fly   157 AVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPP-KG 220
                .|..|.        :.:.|...:.||..|....:.::|:|.||:..||:::  ||:.| ||
Mouse   196 ----ALERDI--------ISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKG 246

  Fly   221 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE 285
            |::.|||||||||||||||.:...||..|..|.|..||.|:..||||.||.:|..::|:.:||||
Mouse   247 VLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDE 311

  Fly   286 IDAVGTKRYDSNSGGEREIQRTM-LELLNQLDGFDSRGD-------VKVIMATNRIETLDPALIR 342
            ||::.::|..|.   |.|..|.| .|||.|:||.....:       |.|:.|||....:|.||.|
Mouse   312 IDSICSRRGTSE---EHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR 373

  Fly   343 PGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALR 407
              |::::|..|||..|.:..:..|....:.||:||||:.:....:..|||||..:|.:|.|||:|
Mouse   374 --RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMR 436

  Fly   408 ER-----------------RMKVTNEDF----KKSKESV 425
            .|                 .|..|.|||    ||..:||
Mouse   437 RRIEGLTPEEIRNLSREAMHMPTTMEDFEMALKKISKSV 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 133/429 (31%)
Katna1NP_035965.2 AAA 243..384 CDD:214640 65/145 (45%)
AAA 247..383 CDD:278434 61/140 (44%)
Vps4_C <458..491 CDD:286426 8/18 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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