DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and rpt-3

DIOPT Version :10

Sequence 1:NP_524469.2 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_498429.1 Gene:rpt-3 / 175925 WormBaseID:WBGene00004503 Length:414 Species:Caenorhabditis elegans


Alignment Length:409 Identity:201/409 - (49%)
Similarity:290/409 - (70%) Gaps:28/409 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PPIP-TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQER--LKPQ 87
            ||:| |.|....      |..:||      |....:|..|:.::||:.:|   .||.|:  |..|
 Worm    23 PPLPATCVDVSS------DDYIKL------TTLERQLAHLQVMEDYIKLE---TRNLEKELLHAQ 72

  Fly    88 DEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLN 152
            :|        |..::..|:.:|...|.:|.|||||.::.||.:||.:||.:|::.|:|||||.|:
 Worm    73 EE--------VKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALH 129

  Fly   153 HKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKP 217
            ...:|:|.||..:.|..:.:::.::.|..:|.||||||.|.||::|:|||||||.|.|:::||.|
 Worm   130 KYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDP 194

  Fly   218 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 282
            |:||::|||||.|||:||||||..|:|:|:||||||.:|||||:||::||::||:|:|::|||:|
 Worm   195 PRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIF 259

  Fly   283 IDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 347
            ||||||:.|||:|:.:|.:||:||.:||||||:||||...:|||||||||.:||||||:||||:|
 Worm   260 IDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLD 324

  Fly   348 RKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMK 412
            |||||||||.:.||.:|:...|||.|::||:|.:.:...|.:|||||.:||.|||:.|:||.|..
 Worm   325 RKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYV 389

  Fly   413 VTNEDFKKSKESVLYRKKE 431
            |..:|.:|:.::|:  ||:
 Worm   390 VLTKDLEKAYKNVV--KKD 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_524469.2 PTZ00361 1..439 CDD:185575 201/409 (49%)
rpt-3NP_498429.1 PTZ00454 35..414 CDD:240423 196/391 (50%)

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