DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt2 and Psmc1

DIOPT Version :9

Sequence 1:NP_001287493.1 Gene:Rpt2 / 42828 FlyBaseID:FBgn0015282 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_476464.1 Gene:Psmc1 / 117263 RGDID:621097 Length:440 Species:Rattus norvegicus


Alignment Length:440 Identity:402/440 - (91%)
Similarity:422/440 - (95%) Gaps:1/440 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGQNQS-AQGGAGEKKDDKDKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKL 64
            |||:|| ..|..|.||||||||||||||:||||||||::.||||||.|||.|||||:||||||||
  Rat     1 MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKL 65

  Fly    65 ERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSE 129
            |||||||:||:|||||||::||.:||.||||||||||||||||||.|||||||||||||||||||
  Rat    66 ERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSE 130

  Fly   130 HYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQ 194
            ||||||||||||.||||||||||||||||:|||.|||||:|||||:|||||||||||||||.|||
  Rat   131 HYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQ 195

  Fly   195 EIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 259
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   196 EIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260

  Fly   260 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 324
            |||||||||||||||||||||||||||||:|||||||||||||||||||||||||||||||||||
  Rat   261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325

  Fly   325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDL 389
            ||||||||||||||||||||||||||||||||||||:|||.|||||||||:||.|.:||||||||
  Rat   326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDL 390

  Fly   390 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 439
            ||||||||||||||||||||||||||||||||||:|||:|:|||||||||
  Rat   391 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt2NP_001287493.1 PTZ00361 1..439 CDD:185575 400/438 (91%)
Psmc1NP_476464.1 PTZ00361 1..440 CDD:185575 400/438 (91%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49 35/47 (74%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 14/19 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338780
Domainoid 1 1.000 263 1.000 Domainoid score I1865
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2095
Inparanoid 1 1.050 802 1.000 Inparanoid score I471
OMA 1 1.010 - - QHG54128
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 1 1.000 - - FOG0002872
OrthoInspector 1 1.000 - - oto95452
orthoMCL 1 0.900 - - OOG6_101477
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2230
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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