DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sba and mbd6

DIOPT Version :9

Sequence 1:NP_001262888.1 Gene:sba / 42824 FlyBaseID:FBgn0016754 Length:1606 Species:Drosophila melanogaster
Sequence 2:XP_690360.3 Gene:mbd6 / 561863 ZFINID:ZDB-GENE-041027-3 Length:1320 Species:Danio rerio


Alignment Length:1407 Identity:302/1407 - (21%)
Similarity:444/1407 - (31%) Gaps:445/1407 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 GWRRLTNNNEVAYISPSGKTLRTQFQIKDYLLTQGTCKCGLPCPLRPEYLFDFN----AQVPNQP 311
            ||||...:..|:||||||..|::..:::.||.|.|||||||.|||.|..:|:|:    .|.|...
Zfish    25 GWRRKVEDGAVSYISPSGTVLQSVDEVRVYLRTDGTCKCGLECPLVPNKVFNFDPAAMVQAPGHQ 89

  Fly   312 LKLPTEASTATPTPCRHQRRFLESQQLQLPQQQQQQQHLQHQQQQQQAVKDV--SVDVAVS---- 370
            .....|..|..   |.|:|:......|      .|..|..|.....||...|  |||...|    
Zfish    90 SGKVEEDMTKL---CNHRRKVDAMTAL------CQSMHPSHLAPLAQATGGVVCSVDGRESRGSM 145

  Fly   371 -VSGPAA-------------------VSDVFSTLMTSTARTATMVTPTAATSPAQAATTTTHEMA 415
             ..|..|                   :|...|.|...:...:.:..|....||.:.:....:  |
Zfish   146 LTHGDGAHCTYPQPRHSQPKPNMGFPLSSSRSVLQNGSVNLSPISRPPDQGSPLKKSQAPVY--A 208

  Fly   416 NKDADCHKYGNNKLPATNRTATTPT------PAPTPPPQHPNGMPTSQALALGGVP---VGVHPK 471
            .:....|.......|  .|||..||      |....||...|....|.:|:...:|   .|...|
Zfish   209 KQQWSPHPPLIQNTP--QRTAHNPTSPNNVKPTQAHPPDSINSFSFSSSLSNRTIPPMSQGASVK 271

  Fly   472 RPT-------------------------GGH-VIKQPASVLGP--PCTPPLAVGGANTVIQQQQP 508
            .|:                         ..| :..|.|..|.|  ||:.|.......:...:.:.
Zfish   272 SPSPLSPSRTRDSFSPHQRSRHSSTSSLSDHQIFIQGAKPLHPTMPCSSPKLPNAPLSPCSRLEG 336

  Fly   509 LQQHPNFKD--DPAGYLQQQTALLHNSLGVGL-DATKTAAGTSTARALPQEPIVHSSQQQQQQQQ 570
            :.||  :||  ..:.........:|.:..|.| :|:....|....:.|.|:...|.:........
Zfish   337 ILQH--YKDCSTSSSISTSANQSIHQASLVALPNASDKRNGAMLGQILNQKQKSHINNSFPASSL 399

  Fly   571 QQLQQQQQLQRQKIRRLSLFGKWETDPAPATNSQPTNGTRALQVDAAAFARPQKPQVTCVTLVPP 635
            .....:.||..||...||..      |....:.:..:......::::......:||.....|:| 
Zfish   400 LSAAAKAQLANQKTEGLSAL------PLAGLDKEQQSKVLISTLNSSVHNTSSRPQALTALLLP- 457

  Fly   636 PQESPVSSSAAETLEKRPE------------QVGAISTSHESPRQSL---SSP-----TDSV--- 677
              .||.|.|......||..            |:|.......||.|.:   |||     :|::   
Zfish   458 --HSPASPSEKNLRRKRQRRSPTVLSMLKDTQLGRTVLDLSSPPQLIPPCSSPPVHNSSDNLRLP 520

  Fly   678 ---------DS--------AKSTPSASPKPQTQ-----VPMQ---PQLLQMRP-HLQANLSAQ-- 714
                     ||        |.|.|||||.....     :.||   .|.:..:| ::.||.|.:  
Zfish   521 VNPPNCRLQDSEECKKPGIANSLPSASPSQPLSALLHLLSMQNANQQCIGAKPGNMHANTSPRPI 585

  Fly   715 TPVTVPAH----VRVMRQQQAQIIP--GQRLPVASSSAAMATMTRSIVTSTAGTSTITGRPVATT 773
            ||:|....    :|:...|.....|  ..:.|.:.:...|...|         |:.:......|.
Zfish   586 TPLTPQGDGQSVLRIHNPQPQSTTPTLDPQQPASQAFPIMGDET---------TANLKAASSNTI 641

  Fly   774 LNNSNPTV--------AQLQSMANAMNGAGGGGQLIMTSSGQLLVIPTPSKQTTQHHRPG----- 825
            ||.|.|.|        ..:.||.|.|:.............|..:....|...|.|.::|.     
Zfish   642 LNLSQPHVGTTTPDLSGSIISMINQMSSNSCLPTFAEKVCGSKMTEAYPEHSTYQINQPNHSPDV 706

  Fly   826 -------------------QPGQGV----------------------------IIQQQQ------ 837
                               :|..|:                            .:.|:|      
Zfish   707 EDKGPVETIDSDTRLLAGCEPDHGLSLSTAPTSDLTNPATDPAISLPLAEAFPFMTQEQLLQLLS 771

  Fly   838 -----PAELHP----QPGGGYIVSQPSPVAAASSSSSSSTVILNSGGAKLLHHQ--IITSQAGQI 891
                 |:.|.|    .|.|.:..||||   ...|:.|....|.|.|....|.:|  :..:....:
Zfish   772 SNAGLPSLLPPFLGSLPLGLWTGSQPS---TPGSNQSQHPPIGNQGSPLNLLNQAELPLNLLSLL 833

  Fly   892 NQATSGG---------SGNQP---QTVLLNTLPNGGYIVQQQPQTQSPQQAEQILAMPQP----- 939
            |.|.|..         :|.:|   |.:|:.:|     ::.|.|....|..|.. |.:|.|     
Zfish   834 NPAGSAAALPPVAGVETGEKPPGLQALLMASL-----LLGQNPAAMLPLPALN-LELPTPPQQVF 892

  Fly   940 --------PPA------------------------QTLIISSPDTKRRARKRKSSVCHTPPP--- 969
                    |||                        |:|::|:|             ...|||   
Zfish   893 ADGVSLEKPPALLDSVLMGPGLLEALQTLAPGADGQSLLLSAP-------------LAAPPPAFL 944

  Fly   970 SGSPAKIIS--------PQISPSIPN------QAPALLHQQAAAA--AAAAPQ----FQQQFQ-- 1012
            |.:||.:.:        |..:||.|.      .:|||:....:..  .:|.|:    ..:|.:  
Zfish   945 SLNPALLAAALAQTEPLPNHTPSPPPHSQGTLSSPALVSTSVSCGPLVSAGPEVCDPLAEQDKNS 1009

  Fly  1013 ---------LSPGIQGIVVNKPNPPQQPQTQQLLLQNGQILQQVNLIGQ-QLLMPAGLVMGPDAT 1067
                     |:||:.|.                |...|.|.....|:|. .||:|.|:.:..:.|
Zfish  1010 QTHHFLSPLLAPGVLGD----------------LAALGNINSLHGLLGAGPLLLPQGVPLTQNQT 1058

  Fly  1068 LLQIQNMPATSLMTPQGPVML--------RTPSPQNKPSFISPSAGGQQYLVGANGQLSPIGQIY 1124
            .|.    |.|.|.....|.::        .||.||:..:....|...|:   .|.|...|.|...
Zfish  1059 TLN----PLTCLQLTMAPALMGEKPVALHETPPPQDAAAPPHDSLSQQR---EAPGLFDPYGSFM 1116

  Fly  1125 STPMGLVMPTGQQGGASFVQASPTTTTIQIQQQPAPQPTQISLQPAQATYMTETVMSRQG--TAA 1187
            .|.....:...::|..|    :|.|....:||..||.    ||.|.:|..:....:||.|  .|.
Zfish  1117 DTIYTSFLQVSERGSDS----NPLTFPALLQQASAPP----SLSPRRACSVHNPDLSRLGPDVAQ 1173

  Fly  1188 SP----PDTTTCSPRSPERP---------------SSH-------RSSGSDMVQCVSSSEPDAAV 1226
            ||    |..:..||..|.||               |.|       ||.|.:..: ....:.||.|
Zfish  1174 SPARGTPKPSGDSPPPPCRPAGAHALTVEEAKTHTSKHCVFSNGLRSEGGEEEE-EEDEDEDAGV 1237

  Fly  1227 ----SPQSTESRQSPSSTDCERSICKNNVFTQPSGIYKHSEPKIRR--IHITSQTSAENGISLMQ 1285
                ||....||      |.:..|             .|:| :||.  :|..|:...:...:|..
Zfish  1238 QEYLSPTQRTSR------DEDEDI-------------SHAE-QIRAEDVHTGSRRGRKRKQTLQM 1282

  Fly  1286 GQESPTTTQLLSSVPTAQPTVEKTTVRTPTKRSRRPQRGAAR 1327
            |.:.|.....:...|:|...:        ..||.|..||..|
Zfish  1283 GSDLPGGIDSIIEEPSASAIL--------VSRSSRSSRGKRR 1316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbaNP_001262888.1 MBD 241..315 CDD:128673 30/67 (45%)
PWWP 1344..1440 CDD:295359
mbd6XP_690360.3 MBD 22..84 CDD:294079 28/58 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596852
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25063
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR16112
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.030

Return to query results.
Submit another query.