DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbrd-1 and GTE4

DIOPT Version :9

Sequence 1:NP_001369030.1 Gene:tbrd-1 / 42823 FlyBaseID:FBgn0039124 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001184922.1 Gene:GTE4 / 837133 AraportID:AT1G06230 Length:766 Species:Arabidopsis thaliana


Alignment Length:486 Identity:90/486 - (18%)
Similarity:155/486 - (31%) Gaps:157/486 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GRRTNILEELKSVLNCLWRNRFSYHFRHPVDSVSLGVPDYHAVVKHPMDLSTIRKRLHNKYYWQA 102
            |..|.:.:...::|..|.:::..:.|..|||...||:.||:.:::|||||.||:..|....|...
plant   416 GAGTKVFKNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSP 480

  Fly   103 SEALEDFKLIFDNCLLYNLEGSPVYQAGKLLMEAFYMRMESIDLSTEVELKPKSEKRKRKATESL 167
            .|..||.:|.|.|.:.||.||..|:.....|::.|..|...|:.....|:               
plant   481 REFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYNREM--------------- 530

  Fly   168 DQASTSFSAPRASNNYSRQWLSSSSSWLCPPPMPGGVSSFNPSFRNFVGPSLIPSFMPDSLVNPM 232
                      |....|...             :|      .|:.|:.:||::.|           
plant   531 ----------RFVTGYEMN-------------LP------TPTMRSRLGPTMPP----------- 555

  Fly   233 QSMHPMSSMMNPIFKNNWETNEAMDPPPSEPISYRPLDSLAAPLPSPPMEPMTLPWPTPAPVESP 297
                |..::.|.|.:.:|...:                                  ||..|..:|
plant   556 ----PPINVRNTIDRADWSNRQ----------------------------------PTTTPGRTP 582

  Fly   298 ASSPPPAPNPPIIICYKSLDRMIEKSHSDHLLKSMVKRKRKQVTWAFNQADYWRRYSQNPDYDHD 362
            .|:.|....|.                   |.|.......|:                  |..::
plant   583 TSATPSGRTPA-------------------LKKPKANEPNKR------------------DMTYE 610

  Fly   363 REEKLDWKILQERLDSDNFESFDGFVSSVRKMFQNALRCFPEDGLVKVSVKKTNEIFE--KRLPK 425
            .::||...:  :.|..|   ..|..|..|.|. ..|::...|:..|.:.......::|  :.:..
plant   611 EKQKLSGHL--QNLPPD---KLDAIVQIVNKR-NTAVKLRDEEIEVDIDSVDPETLWELDRFVTN 669

  Fly   426 YRELIATAKEKGRQLVASREQDFRDSQNLL--------IKQENANKNFKGWVPKPFIIKTESLFV 482
            |::.::..|.|....:.:|.:..|:||..:        ..:|..| ..|..:|.|.         
plant   670 YKKGLSKKKRKAELAIQARAEAERNSQQQMAPAPAAHEFSREGGN-TAKKTLPTPL--------- 724

  Fly   483 QEQRVYKMEPQDVQEFSPGTEPLDDQTYDSD 513
             ..:|.|...:..:..|..:......:.|||
plant   725 -PSQVEKQNNETSRSSSSSSSSSSSSSSDSD 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-1NP_001369030.1 Bromodomain 39..143 CDD:413371 34/103 (33%)
Bromodomain 328..423 CDD:413371 16/96 (17%)
GTE4NP_001184922.1 PRK04335 46..>179 CDD:235285
Bromo_plant1 421..519 CDD:99938 32/97 (33%)
BET 607..669 CDD:407211 12/67 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000322
OrthoInspector 1 1.000 - - mtm8402
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.770

Return to query results.
Submit another query.