DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbrd-1 and brd3

DIOPT Version :9

Sequence 1:NP_001369030.1 Gene:tbrd-1 / 42823 FlyBaseID:FBgn0039124 Length:513 Species:Drosophila melanogaster
Sequence 2:XP_012823998.1 Gene:brd3 / 733891 XenbaseID:XB-GENE-492565 Length:796 Species:Xenopus tropicalis


Alignment Length:574 Identity:136/574 - (23%)
Similarity:214/574 - (37%) Gaps:171/574 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNELQSNSNQPP-PRNEPYLQPVNGIVQPPVIPPPNRPGRRTNILEELKS-VLNCLWRNRFSYHF 63
            |:.:.:.:..|. |.|.|          .|.:...|:|||:||.|:.::: |:..||:::|::.|
 Frog     1 MSTVTAGAQAPQGPSNLP----------APEVTNSNKPGRKTNQLQYMQNVVVKTLWKHQFAWPF 55

  Fly    64 RHPVDSVSLGVPDYHAVVKHPMDLSTIRKRLHNKYYWQASEALEDFKLIFDNCLLYNLEGSPVYQ 128
            ..|||.|.|.:||||.::|:|||:.||:|||.|.|||.|:|.::||..:|.||.:||.....:..
 Frog    56 YQPVDCVKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSANECMQDFNTMFTNCYIYNKSTDDIVL 120

  Fly   129 AGKLLMEAFYMRMESIDLSTEVELKPKSEKRK-RKATESLDQ------ASTSFSAPRASNNYSRQ 186
            ..:.|.:.|..::..:. ..||||.|.:.|.| ||...:..|      |.|....|         
 Frog   121 MAQALEKIFLQKVAQMP-QEEVELLPPAPKGKGRKPPTATPQAPVVREAETPVEKP--------- 175

  Fly   187 WLSSSSSWLCPPPMPGGVSSFNP--------SFRNFVGP------------------SLIPSFMP 225
                     .|||.|....:..|        |.|....|                  |:.|| :|
 Frog   176 ---------TPPPAPAPAPAPAPKPVEVERVSTRRTEPPAEPRRERYKGATQASAVSSVSPS-IP 230

  Fly   226 DSLVNPMQSMHPMSSMMNPIFKNNWETNEAMDPPPS-----EPISYRPLDSLAAPLPSPPMEPMT 285
            .:.|.|:.|..|:.               |..|.|:     .|.|.:|    :||..:..|.|:.
 Frog   231 HTNVAPVASQTPVI---------------AATPVPTITANVAPASTQP----SAPAAASQMVPVV 276

  Fly   286 LPWPTPAPV---------------------ESPASSPPPAP------------------------ 305
               |..|||                     .|.:.||.|.|                        
 Frog   277 ---PPAAPVVKRKGVKRKADTTTPTTSAITASRSESPIPVPVSVSVSDAKLAKVSNRRESGGRPI 338

  Fly   306 NPPIIICYKSLDRMIEKSHS-------------DHLLKSMVKRKRKQVTWAFNQ---ADYWRRYS 354
            .||    .|.|:......|:             |.:||.|:.:|.....|.|.:   |:....: 
 Frog   339 KPP----KKDLEDGEVPQHAGKKGKLNEHLKYCDSILKEMLSKKHAAYAWPFYKPVDAEALELH- 398

  Fly   355 QNPDYDHDREEKLDWKILQERLDSDNFESFDGFVSSVRKMFQNALRCFPEDGLVKVSVKKTNEIF 419
               ||....:..:|...::.::|:..:.....|.:.:|.||.|..:..|.|..|....:|..::|
 Frog   399 ---DYHDIIKHPMDLSSVKRKMDAREYADAQAFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVF 460

  Fly   420 EKRLPKYRE----------LIATAKEKGRQLVASREQDFRDSQNLLIKQENANK 463
            |.|..|..:          ..|....|..:...:.|:...||.:...::|.|.:
 Frog   461 EMRFAKMPDEPLDPPAPPTAAAPVVSKSTESSHTSEESSSDSDSSDSEEERATR 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-1NP_001369030.1 Bromodomain 39..143 CDD:413371 42/104 (40%)
Bromodomain 328..423 CDD:413371 22/97 (23%)
brd3XP_012823998.1 Bromo_Brdt_I_like 30..136 CDD:99929 42/105 (40%)
Bromo_Brdt_II_like 363..464 CDD:99930 23/104 (22%)
BET 641..705 CDD:374956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000322
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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