DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbrd-1 and pbrm1l

DIOPT Version :9

Sequence 1:NP_001369030.1 Gene:tbrd-1 / 42823 FlyBaseID:FBgn0039124 Length:513 Species:Drosophila melanogaster
Sequence 2:XP_005168819.1 Gene:pbrm1l / 445141 ZFINID:ZDB-GENE-010501-3 Length:1657 Species:Danio rerio


Alignment Length:559 Identity:102/559 - (18%)
Similarity:188/559 - (33%) Gaps:171/559 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SNSNQPPPRNEPYLQPVNGIVQPPVIPPPNRPGRR-TNILEELKSVLNCLWRNRFSYHFRHPVDS 69
            :|::....|...||:.:...:...:....:..||. :.:.::|.|.|          |:      
Zfish   171 TNASMEEERPPSYLKAILEQLLEAIASCTDSSGRLVSELFQKLPSKL----------HY------ 219

  Fly    70 VSLGVPDYHAVVKHPMDLSTIRKRLHNKYYWQASEALEDFKLIFDNCLLYNLEGSPVYQAGKLLM 134
                 |||:||:|.|:||..:.:::...:|...|...:|..|:..|...||..||.|::....:.
Zfish   220 -----PDYYAVIKEPIDLRAVAQKIQGGHYKSISAMAKDIDLLVKNAKTYNEPGSQVFKDANTIK 279

  Fly   135 EAFYMRMESIDLSTEVELKPKSEKRKRKATESLDQASTSFSAPRASNNYSRQWLSSSSSWL---- 195
            :.|..|  .|::......|.....|.|::.:. |:.|....|.:|.:.      |...|.|    
Zfish   280 KVFAQR--KIEIEQAEPTKTSLRIRNRRSAQG-DRLSAITMALQAGSE------SDEDSILTGTV 335

  Fly   196 ----------CPPPMPGGVSSFNP---------SFRNFVGPSLIPSFM--------PD---SLVN 230
                      |      |:|:.:|         ..|:..|..|...|:        ||   .:.|
Zfish   336 RYDTGETEADC------GLSAGDPILLLYQAVRGARSVQGLLLSEPFLQLPSRREYPDYYHQIKN 394

  Fly   231 PMQSMHPMSSMMNPIFKNNWETNEAMDPPPSEPISYRPLDSLAAPLPSPPMEPMTLPWPTPAPVE 295
            |:........|.|.                    .|..::.:.|.|                   
Zfish   395 PISLQQIREKMKNG--------------------DYEAVEQIEADL------------------- 420

  Fly   296 SPASSPPPAPNPPIIICYKSLDRM------------------IEKSHSD--------HLLKSMVK 334
            |.........|.|....||...|:                  :..::||        |  |...|
Zfish   421 SVMFENARRYNMPNSTIYKRAQRLQLIMQQKKREFRDDDEGDVSTANSDVGSSKKKSH--KKSAK 483

  Fly   335 RKRKQVTWAF----NQADYWRRY----------SQNPDYDHDREEKLDWKILQERLDSDNFESFD 385
            :.|.::.:|.    .:....||.          ...|||....::.:|.:.::..:.::.:.:.|
Zfish   484 KNRMKMLYAVLTDAREPGSGRRLCDLFMVKPLKKDYPDYYKIIQDPMDMRTIENNIRTERYNNED 548

  Fly   386 GFVSSVRKMFQNALRCFPEDGLVKVSVKKTNEIFEKRLPKYRELIATAKEKGRQLVASREQDFRD 450
            ..:..::.||:|| |.:.|:|   ..|.....:.||.:          |:|.::|..:.|:|...
Zfish   549 ALMEDMKLMFRNA-RHYNEEG---SQVYNDANVLEKMV----------KDKQKELGPAPEEDDVG 599

  Fly   451 SQNLLIKQENANKNFKGWVPKPFIIKTESLFVQEQRVYK 489
            |..|.:::.....:     ||...|:|..|..:...:|:
Zfish   600 SPKLKLRRSGVAVS-----PKKARIQTTPLQQKLSELYE 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-1NP_001369030.1 Bromodomain 39..143 CDD:413371 26/104 (25%)
Bromodomain 328..423 CDD:413371 21/108 (19%)
pbrm1lXP_005168819.1 Bromo_polybromo_I 43..152 CDD:99954
Bromo_polybromo_II 184..286 CDD:99948 28/124 (23%)
Bromo_polybromo_III 352..452 CDD:99951 20/138 (14%)
Bromo_polybromo_IV 485..585 CDD:99949 20/113 (18%)
Bromo_polybromo_V 624..723 CDD:99946 2/10 (20%)
Bromo_polybromo_VI 746..853 CDD:99956
BAH_polybromo 933..1049 CDD:240068
BAH_polybromo 1123..1241 CDD:240068
HMG-box 1346..1408 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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