DRSC/TRiP Functional Genomics Resources

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Protein Alignment tbrd-1 and Brd4

DIOPT Version :10

Sequence 1:NP_651190.1 Gene:tbrd-1 / 42823 FlyBaseID:FBgn0039124 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001094373.1 Gene:Brd4 / 362844 RGDID:1307282 Length:1403 Species:Rattus norvegicus


Alignment Length:668 Identity:156/668 - (23%)
Similarity:223/668 - (33%) Gaps:245/668 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNELQSNSNQPPPRNEPYLQPVNGIVQPPVIPPPNRPGRRTNILEE-LKSVLNCLWRNRFSYHFR 64
            |:..|:.: ||...|.....|     .||....||:|.|:||.|:. |:.||..||:::|::.|:
  Rat    26 MSTTQAQA-QPQSANAASTNP-----PPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQ 84

  Fly    65 HPVDSVSLGVPDYHAVVKHPMDLSTIRKRLHNKYYWQASEALEDFKLIFDNCLLYNLEGSPVYQA 129
            .|||:|.|.:|||:.::|.|||:.||:|||.|.|||.|.|.::||..:|.||.:||..|..:...
  Rat    85 QPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLM 149

  Fly   130 GKLLMEAFYMRMESIDLSTE------VELKPKSEKRKRKAT--------ESLDQASTSFSAPRAS 180
            .:.|.:.|..::.  :|.||      |:.|.:...||...|        .:..|||||.......
  Rat   150 AEALEKLFLQKIN--ELPTEETEIMIVQAKGRGRGRKETGTAKPGVSTVPNTTQASTSPQTQMPQ 212

  Fly   181 NNYSRQWLSSSSSWLCPPPMPGGVSSFNPSFRNFVGPSLIPSFMPDSLVNPMQSMHPMSSMMNPI 245
            .|             .|||:......|             |:..||.:..|     |:.:|:   
  Rat   213 QN-------------PPPPVQATTHPF-------------PAVTPDLIAQP-----PVMTMV--- 243

  Fly   246 FKNNWETNEAMDPPPSEPISYRPLDSLAAPLPSPPMEPMTLPWPTPAPVESPASSPPP--APNPP 308
                          |.:|        |..|.|.||..|     |.||||..|..|.||  |..|.
  Rat   244 --------------PPQP--------LQTPSPVPPQPP-----PPPAPVPQPVQSHPPIIATTPQ 281

  Fly   309 IIICYKSLDRMI----------------------------------------------------E 321
            .:...|.:.|..                                                    |
  Rat   282 PVKTKKGVKRKADTTTPTTIDPIHEPPSLAPEPKTAKLGPRRESSRPVKPPKKDVPDSQQHPGPE 346

  Fly   322 KSH--SDHL------LKSMVKRKRKQVTWAFNQADYWRRYSQNP---------DYDHDREEKLDW 369
            ||.  |:.|      ||.|..:|.....|.|          ..|         ||....:..:|.
  Rat   347 KSSKISEQLKCCSGILKEMFAKKHAAYAWPF----------YKPVDVEALGLHDYCDIIKHPMDM 401

  Fly   370 KILQERLDSDNFESFDGFVSSVRKMFQNALRCFPEDGLVKVSVKKTNEIFEKRLPK--------- 425
            ..::.:|:|..:.....|.:.||.||.|..:..|.|..|....:|..::||.|..|         
  Rat   402 STIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPV 466

  Fly   426 ---------------------------------------------YRELIATAKEKGRQLVA--- 442
                                                         ..||....|....||.|   
  Rat   467 VTVSSPAVPPPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQ 531

  Fly   443 -------SREQDFRDSQNLLIK-----QENANKNFKGWVPKPFIIKTESLFVQEQRVYKMEPQDV 495
                   .:|:|.::.:....|     :||.....|...||    ||:........|.|.||...
  Rat   532 PQQNKPKKKEKDKKEKKKEKHKKKEEMEENKKSKAKELPPK----KTKKNNSSNSNVSKKEPAPT 592

  Fly   496 QEFSPGTEPLDDQTYDSD 513
            :     |:|  ..||:|:
  Rat   593 K-----TKP--PPTYESE 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-1NP_651190.1 Bromodomain 39..143 CDD:445827 44/104 (42%)
Mucin15 139..>291 CDD:406167 33/165 (20%)
Bromodomain 328..423 CDD:445827 25/109 (23%)
Brd4NP_001094373.1 Bromo_Brdt_I_like 58..164 CDD:99929 44/107 (41%)
Bromo_Brdt_II_like 354..455 CDD:99930 25/110 (23%)
BET 610..674 CDD:435704
PHA03247 <801..1249 CDD:223021
TPH <1268..1311 CDD:464007
BRD4_CDT 1361..1403 CDD:465349
Blue background indicates that the domain is not in the aligned region.

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