DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup98-96 and NSP1

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_012494.3 Gene:NSP1 / 853409 SGDID:S000003577 Length:823 Species:Saccharomyces cerevisiae


Alignment Length:1010 Identity:232/1010 - (22%)
Similarity:339/1010 - (33%) Gaps:339/1010 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 NTSTGFGSTATAQPTAFGAF--SQPQQTSNIFGSTQTAASTSLFGQSTLPAFGAAKPTMTAFGQT 138
            |:|||.|:..|.|.| || |  |.|..|:|        |::|:     .||||:.....||||. 
Yeast    28 NSSTGAGAFGTGQST-FG-FNNSAPNNTNN--------ANSSI-----TPAFGSNNTGNTAFGN- 76

  Fly   139 AAAQPTGSLFGQPAAATSTTGFGGFGTSAPTTTNVFGSGTASAFAQPQATAVGASGVNTGTAVAK 203
              :.||.::||...:.|:|.|....|||      :|||.:|.     |..:.|.:|.|       
Yeast    77 --SNPTSNVFGSNNSTTNTFGSNSAGTS------LFGSSSAQ-----QTKSNGTAGGN------- 121

  Fly   204 YQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEG-----------KSLEELRLEDYMCGRKGPQA 257
               |.|:.:|..    ||.|:.    |....|.|           .|.......:.:.|  ....
Yeast   122 ---TFGSSSLFN----NSTNSN----TTKPAFGGLNFGGGNNTTPSSTGNANTSNNLFG--ATAN 173

  Fly   258 GNAPGAFGFGA-----QVTQPAQPA-----SGGLFGSTAQPSTGL-FGQTVTENKSM-------- 303
            .|.| ||.|||     :.|:|.:||     |.|.......|:||. ||..:..||::        
Yeast   174 ANKP-AFSFGATTNDDKKTEPDKPAFSFNSSVGNKTDAQAPTTGFSFGSQLGGNKTVNEAAKPSL 237

  Fly   304 -FGTTAFGQQPA--------TNN------AFGAATQQNNFLQKPFGATTTTP-FAAPAADASNPF 352
             ||:.:.|..||        ||.      :||.||..|.       .|.||| |:..|....|..
Yeast   238 SFGSGSAGANPAGASQPEPTTNEPAKPALSFGTATSDNK-------TTNTTPSFSFGAKSDENKA 295

  Fly   353 GA--KPAFGQGGSLFGQAPATSAAPAFGQTNTGFGGFGTTA------GATQQSTLFGATPAADPN 409
            ||  ||||..|.....:....|:.|||        .||..:      |..:.:..|||.||...|
Yeast   296 GATSKPAFSFGAKPEEKKDDNSSKPAF--------SFGAKSNEDKQDGTAKPAFSFGAKPAEKNN 352

  Fly   410 KSAFGLGTAASAATTGFGFGAPATSTAGGGLFGNKPATSFAA-PTFGATSTASTPFSNFGLNTST 473
            .         ..:...|.|||.:.....|.  .:|||.||.| |.....|..|.|..:||.....
Yeast   353 N---------ETSKPAFSFGAKSDEKKDGD--ASKPAFSFGAKPDENKASATSKPAFSFGAKPEE 406

  Fly   474 AATGGGLFNSGLNKPATSGFGGFGATSAAPLNFNAGNTGGSLFGNTAKPGGGLFGGGTTTLGGTG 538
            ..      :...:|||.|    |||.|      |.....|     ||||....           |
Yeast   407 KK------DDNSSKPAFS----FGAKS------NEDKQDG-----TAKPAFSF-----------G 439

  Fly   539 AAPTGGLFGGGTTSFGGVGGSLGGGGFGMGTNNSLTGGIMGAQPTLGIMTPSHQPIHQQILARVT 603
            |.|.                         ..||:.|     ::|.......|.:           
Yeast   440 AKPA-------------------------EKNNNET-----SKPAFSFGAKSDE----------- 463

  Fly   604 SPYGDS--PIFKDLKLSSEADATRATNPAAQQAVLDLTSNQYKISTSNNPAPMKVKALGSTLNRK 666
            ...||:  |.|.....|.|...:.::.||..   ....||:.|.|.|:.||              
Yeast   464 KKDGDASKPAFSFGAKSDEKKDSDSSKPAFS---FGTKSNEKKDSGSSKPA-------------- 511

  Fly   667 SLFDGLEEFDASVEGFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRPK-------GAT 724
                         ..|..||..|        |:.|...|:.|.|:..|..:...:       |:.
Yeast   512 -------------FSFGAKPDEK--------KNDEVSKPAFSFGAKANEKKESDESKSAFSFGSK 555

  Fly   725 PNKERE--------SFSGAIPSEPLPPAGNSPGAT------NGRESQDNGRRESWLHPNNLEKVR 775
            |..:.|        || ||.|.|......:.|..|      |.::::::...:|.....:.:.::
Yeast   556 PTGKEEGDGAKAAISF-GAKPEEQKSSDTSKPAFTFGAQKDNEKKTEESSTGKSTADVKSSDSLK 619

  Fly   776 QHNIQTGMDQGSPHNSTLNELVPR----------------KPLDT---------------YRPSS 809
            .::....:...|..|.||::||.:                |.:::               |..:.
Yeast   620 LNSKPVELKPVSLDNKTLDDLVTKWTNQLTESASHFEQYTKKINSWDQVLVKGGEQISQLYSDAV 684

  Fly   810 TVRLSVSTIPENPFEDQSSTIARRETFTSQQANESVLSNRSNEAEDSAANQSRLAIEAAAAEAAD 874
            ....|.:.|      |||.....|:    |...|:.|.|...:.|  |.....::..:.||...:
Yeast   685 MAEHSQNKI------DQSLQYIERQ----QDELENFLDNFETKTE--ALLSDVVSTSSGAAANNN 737

  Fly   875 DESHPTGIVLRRVGYYTIPSLDDLRSYLAEDGSCVVPNFTVGREGYGNV--FFGKEMDVAGLNLD 937
            |:.       |:..|.|..:||:..:.|:.:.|.::...       .||  .|.|..::...|.|
Yeast   738 DQK-------RQQAYKTAQTLDENLNSLSSNLSSLIVEI-------NNVSNTFNKTTNIDINNED 788

  Fly   938 EIV--------HFRNKEIIIYPDDENKPPIGQGLN 964
            |.:        ||.....:    |:|...:.:.:|
Yeast   789 ENIQLIKILNSHFDALRSL----DDNSTSLEKQIN 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 23/86 (27%)
Nucleoporin2 888..1027 CDD:309287 18/87 (21%)
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182
Nucleoporin_FG 50..164 CDD:316182 32/89 (36%)
Nucleoporin_FG 254..318 CDD:316182 27/97 (28%)
NupH_GANP 316..>522 CDD:318883 62/221 (28%)
NSP1NP_012494.3 PHA03255 61..>214 CDD:165513 50/187 (27%)
PTZ00121 <289..>602 CDD:173412 97/443 (22%)
Nsp1_C 620..731 CDD:398645 20/122 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.