DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and NUP49

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_011343.1 Gene:NUP49 / 852703 SGDID:S000003140 Length:472 Species:Saccharomyces cerevisiae


Alignment Length:557 Identity:150/557 - (26%)
Similarity:196/557 - (35%) Gaps:197/557 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 NPFGAKPAFGQGGSLFGQAPATSAAPAFGQTNTGFGGFGTTAGA-TQQST--LFGATPAADPNKS 411
            |...:.||    |.|||||...|.    |..||||...||..|. |..||  ||||.||.    |
Yeast     5 NKASSTPA----GGLFGQASGAST----GNANTGFSFGGTQTGQNTGPSTGGLFGAKPAG----S 57

  Fly   412 AFGLGTA-----ASAATTGFGFGAPATSTAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNT 471
            ..|||.:     ..:.|..||    .::|.|||||||||                         .
Yeast    58 TGGLGASFGQQQQQSQTNAFG----GSATTGGGLFGNKP-------------------------N 93

  Fly   472 STAATGGGLFNSGLNKPATSGFGGFGATSAAPL--NFNAGNTGGSLFG-NTAKPGGGLFG----G 529
            :||.||||||.:..|..:.|.||...|.::..|  |.|..|...|..| |.|  ..||||    |
Yeast    94 NTANTGGGLFGANSNSNSGSLFGSNNAQTSRGLFGNNNTNNINNSSSGMNNA--SAGLFGSKPAG 156

  Fly   530 GTTTLGGT-------------GAAPTG-GLFG---GGTTSFGGVGGSLGGGG---FGMGTNN--- 571
            ||:..|.|             ||.|.| .|||   |.||:.||:.||...|.   ||...||   
Yeast   157 GTSLFGNTSTSSAPAQNQGMFGAKPAGTSLFGNNAGNTTTGGGLFGSKPTGATSLFGSSNNNNNN 221

  Fly   572 -------SLTGGIMGAQPTLGIMTPSHQPIHQQILARVTSPYGDSPIFKDLKLSSEADATRATNP 629
                   |.:||:.|.|.    .....||..|..|..::    ..||....::|.       ..|
Yeast   222 NNSNNIMSASGGLFGNQQ----QQLQQQPQMQCALQNLS----QLPITPMTRISE-------LPP 271

  Fly   630 AAQQAVLDLTSNQY---KISTSNNPAPMKVKALGSTLNRKSLFDGLEEFDASVEGFNLK-PSAKR 690
            ..:|.:..|  :||   ::..|::     :||  .|::...|.|.:....|    :.|| .||..
Yeast   272 QIRQEIEQL--DQYIQKQVQISHH-----LKA--DTIDHDELIDSIPRDVA----YLLKSESATS 323

  Fly   691 LVIKPKVKSVEGGNPSSSIGSAPNTPQSRPKGATPNKERESFSGAIPSEPLPPAGNS-------- 747
            ..:|..:|.:                             .||...|..:.|.....|        
Yeast   324 QYLKQDLKKI-----------------------------SSFKSLIDEDLLDTQTFSVLLQQLLT 359

  Fly   748 PGATNGRESQDNGRRESWLHPNNLEKVRQHNIQTGMDQGSPHNSTLNELVPRKPLDTYRPSSTVR 812
            ||              |.:..|:|:|..|..|               .|..:|..|..|..|.:.
Yeast   360 PG--------------SKISSNDLDKFFQKKI---------------HLYEKKLEDYCRILSDIE 395

  Fly   813 LSVSTI-------PENPFEDQSSTIARRETFTSQQAN 842
            .:|:.|       |.||    :||....:..:|:..|
Yeast   396 TAVNGIDTDLFGAPNNP----NSTAITADLGSSEAEN 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 31/92 (34%)
Nucleoporin2 888..1027 CDD:309287
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182
Nucleoporin_FG 50..164 CDD:316182
Nucleoporin_FG 254..318 CDD:316182
NupH_GANP 316..>522 CDD:318883 65/182 (36%)
NUP49NP_011343.1 Nucleoporin_FG2 29..>289 CDD:406391 98/311 (32%)
V_Alix_like <267..465 CDD:353824 46/244 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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