DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and AT1G63540

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_176542.1 Gene:AT1G63540 / 842659 AraportID:AT1G63540 Length:635 Species:Arabidopsis thaliana


Alignment Length:756 Identity:178/756 - (23%)
Similarity:255/756 - (33%) Gaps:259/756 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 QQSLFGAAAT-------PAQPAGGLFGANTSTGFGSTATAQPT-AFGAFSQPQQTSNIFGSTQTA 111
            |.::.|::.|       |..|.     ...|....||:|:.|. |.|      ..|....||.|:
plant    29 QSNVIGSSITSVPVNDGPVPPL-----ELDSAAVVSTSTSSPVQALG------HDSGATVSTSTS 82

  Fly   112 ASTSLFGQSTLPAFGAAKPTMTAFGQTAAAQPTGSLFGQPAAATSTTGFGGFGTSAPTTTNVFGS 176
            :...:|  |:..:||:|...:|......|..||   ||:|....:|:|.|...||..:|::...|
plant    83 SPVQIF--SSPFSFGSAHAAITPVSSGPAPSPT---FGEPRILLATSGSGASATSTSSTSSPLHS 142

  Fly   177 GTASAFAQPQATAVGASGVNTGTAVA-KYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSL 240
            .:..:|....|   ..:.|::|.|.: ...|.:..|....|..|::.::.    :....|...||
plant   143 SSPFSFGSAPA---AITSVSSGPAQSPASSPRLWIDRFATSSSASATSSS----STSSPFHSSSL 200

  Fly   241 EELRLEDYMCGRKGPQAGNAPGAFGFGAQVTQPAQPASGGLFGSTAQPSTGLFGQTVTENKSMFG 305
                            .|.||..    ..|:....||.|         .|..|||..    ..||
plant   201 ----------------LGFAPAV----TSVSSAPTPACG---------PTQAFGQPT----QAFG 232

  Fly   306 TTAFGQQP---ATNNAFGAATQQNNFLQKPFGATTTTPFAAPAADASNPFGAKPAFGQGGSLFGQ 367
            .:.||..|   .|...|.|:..:|          :.:|...||.:.     .||||   ||.||.
plant   233 LSMFGSTPRFEITGFPFQASASRN----------SPSPSFGPAHNC-----GKPAF---GSPFGN 279

  Fly   368 APATSAAPAFGQTNTGFGGFGTTAGATQQSTLFGATPAADPNKSAFGLGTAASAATTGFGFGAPA 432
                  ..||.:.:.|.....:::.:|:   :||||||:                          
plant   280 ------NVAFARPDVGISPVASSSTSTE---IFGATPAS-------------------------- 309

  Fly   433 TSTAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNSGLNK-PATSGFGGF 496
                   ||  .|.....||...:.|:.|| |..||....:.::|..||||.... ||.|....|
plant   310 -------LF--SPFGPMQAPVQASASSTST-FPPFGCVPPSPSSGSSLFNSAFGSLPAPSSSNFF 364

  Fly   497 GATSAAPLNFNAGNTG-GSLFG---NTAKPGGGLFGGGTTTLGGTGAAPTGGLFGGGTTSFGGVG 557
            |.:|:..|..|...|| |.|.|   |::.||   ||.|  .|.|:    :..||.....:||  |
plant   365 GQSSSNLLGQNPSTTGVGYLPGSPLNSSFPG---FGVG--YLPGS----SSNLFRSNPPNFG--G 418

  Fly   558 GSLGGGGFGMGTN-------------------NSLTGGIMGA-----QPT-LGIMTPSHQPIHQQ 597
            ||:|.|....|.|                   |:.||....|     :|| .|.|.|.:.|.|: 
plant   419 GSIGAGPQHFGFNGDASVLPSTPFSLSPAFSSNTNTGSYPFASHEWSRPTEQGSMNPGYAPTHE- 482

  Fly   598 ILARVTSPYGDS------PIFK-DLKLSSEADATRATNPAAQQAVLDLTSNQYKISTSNNPAPMK 655
                     ||:      |..| ::.:|     ..|:.|...::..:|....||......|.|  
plant   483 ---------GDNSSGWSFPTSKGNIYIS-----ISASKPYLHKSHEELRWEDYKQGDKGGPFP-- 531

  Fly   656 VKALGSTLNRKSLFDGLEEFDASVEGFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRP 720
                                                           ..|:|:|||.||...|.|
plant   532 -----------------------------------------------AAPASTIGSRPNAAFSPP 549

  Fly   721 K-----------GATPNKERE---SFSGAI--PSEPLPPAG 745
            .           |||.:....   :|:||.  ||....|.|
plant   550 TVSPPAHGCTACGATSSSSASRHFTFNGATSPPSAATTPPG 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 18/85 (21%)
Nucleoporin2 888..1027 CDD:309287
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182 5/25 (20%)
Nucleoporin_FG 50..164 CDD:316182 31/116 (27%)
Nucleoporin_FG 254..318 CDD:316182 17/66 (26%)
NupH_GANP 316..>522 CDD:318883 54/210 (26%)
AT1G63540NP_176542.1 KAR9 <359..589 CDD:285747 70/304 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23198
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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