DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and AT1G10390

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_001031018.1 Gene:AT1G10390 / 837579 AraportID:AT1G10390 Length:1041 Species:Arabidopsis thaliana


Alignment Length:1169 Identity:330/1169 - (28%)
Similarity:471/1169 - (40%) Gaps:346/1169 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FGGAKPSFGATPAATSFGGFSG---------TTTTTPFGQS------------------------ 33
            ||.:.|:|||:||::.|||.||         |..:.|||.|                        
plant    87 FGNSTPAFGASPASSPFGGSSGFGQKPLGFSTPQSNPFGNSTQQSQPAFGNTSFGSSTPFGATNT 151

  Fly    34 -AFGKPAAPAFGNTSTFAAQPAQQSLFGAAATPA---------------------QPA------- 69
             |||.|:.|:||.|||.:...:....|||..|||                     .||       
plant   152 PAFGAPSTPSFGATSTPSFGASSTPAFGATNTPAFGASNSPSFGATNTPAFGASPTPAFGSTGTT 216

  Fly    70 --------GGLFGANTSTGFGSTAT----AQPT-AFGAFSQPQQTSNIFGSTQT----AASTSLF 117
                    ||.|||:.:..||::.|    |..| ||||.|.|     .||::.|    |:||..|
plant   217 FGNTGFGSGGAFGASNTPAFGASGTPAFGASGTPAFGASSTP-----AFGASSTPAFGASSTPAF 276

  Fly   118 GQSTLPAFGAAKPTMTAFGQTAAAQPTGSLFGQPAAATSTTGFGGFGTSAPTTTNVFGSGTASAF 182
            |.|:.|:|||:..:..:||.:.|...:.|.||..|..::.:.|||...|.||    ||   .|.|
plant   277 GGSSTPSFGASNTSSFSFGSSPAFGQSTSAFGSSAFGSTPSPFGGAQASTPT----FG---GSGF 334

  Fly   183 AQPQATAVGASGVNTGTAVAKYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSLEELRLED 247
            .  |:|..|..|   |:....|.||:..||    |.......|...|:||..::.|:.||||.||
plant   335 G--QSTFGGQQG---GSRAVPYAPTVEADT----GTGTQPAGKLESISAMPAYKEKNYEELRWED 390

  Fly   248 YMCGRKGP--QAGNAPGAFGFGAQVTQPAQPASGGLFGSTAQPSTGLFGQTVTENKSMFGTTAFG 310
            |..|.||.  .||.:||..|||...:||...:....||.|:...|..|..:.:       |..|.
plant   391 YQRGDKGGPLPAGQSPGNAGFGISPSQPNPFSPSPAFGQTSANPTNPFSSSTS-------TNPFA 448

  Fly   311 QQPAT--NNAFGAATQQNNFLQKPFG------------ATTTTPFAAPAA-DASNP---FGAK-- 355
            .|..|  :::||.||  :||...|||            :|||:.|.:.:| ..:.|   ||:.  
plant   449 PQTPTIASSSFGTAT--SNFGSSPFGVTSSSNLFGSGSSTTTSVFGSSSAFGTTTPSPLFGSSST 511

  Fly   356 PAFGQGGSLFGQAPATSAAPAFGQTNTGFGGFGTTAGATQQSTLFGATPAADPNKSAFGLGTAAS 420
            |.||...|:||.||...|.||||.              :|.||||.:||:.....||||      
plant   512 PGFGSSSSIFGSAPGQGATPAFGN--------------SQPSTLFNSTPSTGQTGSAFG------ 556

  Fly   421 AATTGFGFGAPATSTAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNSGL 485
              .||..||.          ||..     :||.||..|..:.|.:.||...|:::|         
plant   557 --QTGSAFGQ----------FGQS-----SAPAFGQNSIFNKPSTGFGNMFSSSST--------- 595

  Fly   486 NKPATSGFGGFGATSAAPLNFNAGNTGGSLFGNTAKPGGGLFGGGTTTLGGTGAAPTGGLFGGGT 550
              ..||....||.|..|         |.:.| .:|:||....|.|....|...||.|.|..||  
plant   596 --LTTSSSSPFGQTMPA---------GVTPF-QSAQPGQASNGFGFNNFGQNQAANTTGNAGG-- 646

  Fly   551 TSFGGVGGSLGGGGFGMGTNNSLTGGIMGAQPTLGIMTPSHQPIHQQIL--ARVTSPYGDSPIFK 613
                  .|..|.|.||.                      |..|::..:|  ..||:|:|..|...
plant   647 ------LGIFGQGNFGQ----------------------SPAPLNSVVLQPVAVTNPFGTLPAMP 683

  Fly   614 DLKLSSEADATRATNPAAQQAVLDLTSNQYKISTS---NNPAPMKVKALGST---LNRK------ 666
            .:.::...::               .|.||.||:.   :.|||:::.:|.::   |:|:      
plant   684 QISINQGGNS---------------PSIQYGISSMPVVDKPAPVRISSLLTSRHLLHRRVRLPAR 733

  Fly   667 -----------SLFDGLEEFDASVEGFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRP 720
                       ..|...||..::       |.|..|.|..:       ||.:.:........||.
plant   734 KYRPGENGPKVPFFTDDEESSST-------PKADALFIPRE-------NPRALVIRPVQQWSSRD 784

  Fly   721 KGATPNKERESFSGAIPSEPLPPAGNSPG-ATNGRESQDNGRRESWLHPNNLEKVRQHNIQTGMD 784
            |...|.::|       |:.||...|.||. ||:......||                 |.:.|..
plant   785 KSILPKEQR-------PTAPLHDNGKSPDMATDAANHDRNG-----------------NGELGAT 825

  Fly   785 QGSPHNS-TLNELVPRKPLDTYRPSSTVRLSVSTIPENPFEDQSSTIARRETFTSQQANESVLSN 848
            ....|.| ..|:          :|:.|.|...::..|.|:          :|.:..:|.|:.:  
plant   826 GERIHTSVNANQ----------KPNGTTRSDQASEKERPY----------KTLSGHRAGEAAI-- 868

  Fly   849 RSNEAEDSAANQSRLAIEAAAAEAADDESHPTGIVLRRVGYYTIPSLDDLRS-YLAEDGSC-VVP 911
                ..:..|:     |||...:            ||:..|:|.|.:.:|.: ..|:.|.| .|.
plant   869 ----VYEHGAD-----IEALMPK------------LRQSDYFTEPRIQELAAKERADPGYCRRVR 912

  Fly   912 NFTVGREGYGNVFFGKEMDVAGLNLDEIVHFRNKEIIIYPDDENKPPIGQGLNRDAQVTLDQVWP 976
            :|.|||.|||::.|..|.||..|:|:.:|.|..:|:|:|.|:..||.:|||||:.|:|||..:..
plant   913 DFVVGRHGYGSIKFMGETDVRRLDLESLVQFNTREVIVYMDESKKPAVGQGLNKPAEVTLLNIKC 977

  Fly   977 LDKTKHEAIKDPQRLLEMDWEGKLRRVCDKNDTRFIEYRPETGSWVFRVKHFSKYGLGDSDEED 1040
            :||...:...:.:|:.:  ::..|::..:.....|:.:.|..|.|.|||:|||.|.|||.||||
plant   978 IDKKTGKQFTEGERVEK--YKMMLKKKAEAQGAEFVSFDPVKGEWKFRVEHFSSYKLGDEDEED 1039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 27/85 (32%)
Nucleoporin2 888..1027 CDD:309287 49/140 (35%)
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182 38/141 (27%)
Nucleoporin_FG 50..164 CDD:316182 47/158 (30%)
Nucleoporin_FG 254..318 CDD:316182 19/67 (28%)
NupH_GANP 316..>522 CDD:318883 66/223 (30%)
AT1G10390NP_001031018.1 PHA03307 37..>394 CDD:223039 105/327 (32%)
PTZ00473 <236..340 CDD:240430 43/117 (37%)
SOG2 <399..>512 CDD:371045 35/121 (29%)
Med15 401..>804 CDD:312941 137/535 (26%)
Nucleoporin2 887..1027 CDD:367810 49/141 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 109 1.000 Domainoid score I2119
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 294 1.000 Inparanoid score I815
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D93359at2759
OrthoFinder 1 1.000 - - FOG0003622
OrthoInspector 1 1.000 - - otm2493
orthoMCL 1 0.900 - - OOG6_101756
Panther 1 1.100 - - O PTHR23198
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1810
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.870

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