Sequence 1: | NP_001262885.1 | Gene: | Nup98-96 / 42816 | FlyBaseID: | FBgn0039120 | Length: | 1960 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_112336.2 | Gene: | Nup98 / 81738 | RGDID: | 71033 | Length: | 1816 | Species: | Rattus norvegicus |
Alignment Length: | 2067 | Identity: | 697/2067 - (33%) |
---|---|---|---|
Similarity: | 997/2067 - (48%) | Gaps: | 395/2067 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 SFGATPAATSFGGFSGTTTTTPFGQ-SAFGKPAAPAFGNTSTFAAQPAQQSLFGAAATPAQPAGG 71
Fly 72 LFGANTSTGFGSTATAQPTAFGAFSQPQQTSN-IFGSTQTAASTSLFGQSTLPAFGAAKPTMTAF 135
Fly 136 GQTAAAQPTGSLFGQPAAATSTTGFGGFGTSAPTTTNVFGSGTASAFAQPQATAVGASGVNTGTA 200
Fly 201 VAKYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSLEELRLEDYMCGRKGPQ----AGNAP 261
Fly 262 GAFGFGAQVTQPAQPASGGLFGSTAQPSTGLFGQTVTENKSMFG--TTAFGQQPATNNAFGAATQ 324
Fly 325 QNNFL-QKPFGATTTTP-----------FAAPAADASNPFGAKPAFGQGGSLFGQAPATSAAPA- 376
Fly 377 ------FGQTNTGFGGFGTTAGATQQSTLFGATPAADPNK-SAFGLGTAASAATTGFGFGAPATS 434
Fly 435 TAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNSGLNKPATSGFGGFGAT 499
Fly 500 SAAPLNFNAGNTGGSLFGNTAKPGGGLFGGGTTTLGGTGAAPTGGLFGGGTTSFGG-----VGGS 559
Fly 560 LGGGGFGMGTNNSLTG--GIMGAQPTLGIMTP----SHQPIHQQILARVT-SPYGDSPIFK---- 613
Fly 614 DLKLSSEADATRATNPAAQQAVLDLTSNQYKISTSNNPAP---MKVKALGSTLNRKS-LFDGLEE 674
Fly 675 FDASVE--GFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRPKGATPNKERESFSGAIP 737
Fly 738 SEPLPPAGNSPGATNGRESQDNGRRESWLHPNNLEKVRQHNIQTGMDQGSPHNSTLNELVPRKPL 802
Fly 803 DTYRPSSTVRLSVSTIPENPFEDQSSTIARRETFTSQQANESVLSNRSNEAEDSAANQSRLAIEA 867
Fly 868 AAAEAADDESHPTGIVLRRVGYYTIPSLDDLRSYLAEDGSCVVPNFTVGREGYGNVFFGKEMDVA 932
Fly 933 GLNLDEIVHFRNKEIIIYPDDENKPPIGQGLNRDAQVTLDQVWPLDKTKHEAIKDPQRLLEMDWE 997
Fly 998 GKLRRVCDKNDTRFIEYRPETGSWVFRVKHFSKYGLGDSDEEDE---LPTDPKKAKIATLEAQQR 1059
Fly 1060 ANAEKMTLNS------LRQAQKISEDAARNLDPKALVAGVASGFRPMDDTAEFLLMDKTQFFQAG 1118
Fly 1119 GNSDFSMFDPPRQRPTITSPTAVLAQEMVGNEAHKMQLMKSSFFVEDNAPEDEPMETTGRLLRHR 1183
Fly 1184 KFFNVEPLVWKDGASESSSQYDFEHPSPALPISSSVSEAS-----------------LMCDAHYE 1231
Fly 1232 ETSSMATGSIVAAVKETKFEMPVTKAFKFVCKPKVAP--------IKLRATTVPLPRSIAYEMRD 1288
Fly 1289 NWIADLGFYKGRSFKLSFGPQNSLVLPSTYNNMQNLKEFTGPSLPVSMVFA----PRSATDLSPS 1349
Fly 1350 VMQLVEFNMVKGNEGFRESIIPH--------LEVQLNDCLSVNVEGSECPCIHPDSGTKLVSKH- 1405
Fly 1406 FSESLKQRNAGLKEDYSVSVWSLLF----ALWGDHDEL-VDLEKNSHYM-VMCRRNLLSEWLENT 1464
Fly 1465 LLGKDLLSKKVS---THSYLEHMLDLLSCHRVNEACELAFSYDDANLALVLSQLSSGAVFRLLME 1526
Fly 1527 EQLFAWQQSKSDKYIDLERLKMYMLAAGAPMMQ-SSHGAINLLENKNWLTALALQLWYFTAPTSS 1590
Fly 1591 ITDALNAYNDAFQAEEC----YAEPPKPSYRDA-------PTDTKKPVYDLRYHLLQLHSKRMHS 1644
Fly 1645 LEETLNPITHTADAMDFRLSWLLLQTLRALGYRHCSPLTEARLSVDFASQLENEGLWQWGIFVLL 1709
Fly 1710 HIKQQTQRERAVQQMLQRNVSVSAKVALYAEERFIVEELGIPMSWVDYAKAVKAGASGKHHLQAK 1774
Fly 1775 YLLKAKHFATAHDVIFQHIAPDAIINGKMKYLHSLLIQFEDTEGSSIRVPNWANQGQIFLDFIDI 1839
Fly 1840 SAKFKQIRSVTNIADINA-RWENLKPQLSELCSRISLLPCPTSKHRLCQSEISQSLSCLVHGMCI 1903
Fly 1904 V--CPEMESST----------VLKVALERLPLPQEFASKELR----IWLEEL 1939 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nup98-96 | NP_001262885.1 | Nucleoporin_FG | 395..481 | CDD:316182 | 24/86 (28%) |
Nucleoporin2 | 888..1027 | CDD:309287 | 78/138 (57%) | ||
Nup96 | 1484..1762 | CDD:314912 | 119/289 (41%) | ||
Nucleoporin_FG | <1..74 | CDD:316182 | 31/66 (47%) | ||
Nucleoporin_FG | 50..164 | CDD:316182 | 41/114 (36%) | ||
Nucleoporin_FG | 254..318 | CDD:316182 | 26/69 (38%) | ||
NupH_GANP | 316..>522 | CDD:318883 | 69/225 (31%) | ||
Nup98 | NP_112336.2 | FG repeats 1 | 1..156 | 76/188 (40%) | |
Nucleoporin_FG | 25..149 | CDD:290362 | 59/152 (39%) | ||
NupH_GANP | 26..336 | CDD:293373 | 144/356 (40%) | ||
GLEBS, interaction with RAE1. /evidence=ECO:0000250 | 157..213 | 32/56 (57%) | |||
FG repeats 2 | 214..480 | 118/356 (33%) | |||
Nucleoporin_FG | 215..303 | CDD:290362 | 38/98 (39%) | ||
Nucleoporin_FG | 261..392 | CDD:290362 | 56/157 (36%) | ||
Nucleoporin2 | 740..880 | CDD:282016 | 78/139 (56%) | ||
Nup96 | 1333..1624 | CDD:288926 | 120/291 (41%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166352740 | |
Domainoid | 1 | 1.000 | 217 | 1.000 | Domainoid score | I2608 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0845 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H35472 | |
Inparanoid | 1 | 1.050 | 810 | 1.000 | Inparanoid score | I456 |
OMA | 1 | 1.010 | - | - | QHG55353 | |
OrthoDB | 1 | 1.010 | - | - | D156436at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0003622 | |
OrthoInspector | 1 | 1.000 | - | - | oto96538 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101756 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR23198 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1810 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
16 | 15.770 |