DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and nup98

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_956979.2 Gene:nup98 / 777756 ZFINID:ZDB-GENE-040426-1180 Length:1814 Species:Danio rerio


Alignment Length:2080 Identity:686/2080 - (32%)
Similarity:982/2080 - (47%) Gaps:438/2080 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SFGATPAATSFGGFSGTTTTTPFGQSAFGKPAAPAFGNTSTFAAQPAQQSLFGAAATPAQPAGGL 72
            |||| |.....||| ||::|  |||...|..|.|....:|.|........|||  .|..:| |||
Zfish     5 SFGA-PFGGGTGGF-GTSST--FGQPNSGFGATPGGFGSSAFGTTNNTGGLFG--NTQNKP-GGL 62

  Fly    73 FGANTSTGFGSTATAQPTAFGAFSQPQQTSN-IFGSTQTAASTSLFGQSTLPAFGAAKPTMTAFG 136
            ||::|.:...:::|:....|||.|   .||| :||||.|... .||.|.. .||||.||  .|||
Zfish    63 FGSSTFSQPVTSSTSSGFGFGATS---GTSNSLFGSTNTGGG-GLFSQQN-NAFGANKP--AAFG 120

  Fly   137 QTAAAQPTGSLFGQPAAATSTTGFGGFGTSAPTTTNVFGSGTASAFAQPQATAVGASGVNTGTAV 201
            ....:..:|.|||  ...|::..|||      |:.::|||.:.:| |.|            ||.:
Zfish   121 NFGTSTSSGGLFG--TTNTASNPFGG------TSGSLFGSSSFTA-APP------------GTTI 164

  Fly   202 AKYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSLEELRLEDYMCGRKGPQAGNAPGAFG- 265
             |:.|..|:||::|.|...|:|||..|||||||:|.|||||||||||..|||||  .|.|.|.| 
Zfish   165 -KFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGP--SNLPMAAGT 226

  Fly   266 ---FGAQVTQPAQPASG-GLFGSTAQPSTGL-FGQTVTENKSMFGTTAFGQQPATNNAFGAAT-- 323
               |||  ..||.|::| |||||:| |:||. |||    ||:.|||        :..|||..|  
Zfish   227 GGLFGA--AAPATPSTGTGLFGSSA-PNTGFNFGQ----NKTTFGT--------STGAFGTTTGS 276

  Fly   324 ------------QQNNFLQKPFGATTTT-----PFAAPAADASNPFGAKPAF-----GQGGSLFG 366
                        |||:.|.||||:.|||     .|...::..|:.:..|..|     .|.|.|||
Zfish   277 LFAQPQQQQQQQQQNSSLFKPFGSATTTQNNTFSFGNTSSMVSSSWCTKGLFANTAASQAGGLFG 341

  Fly   367 QAPATSA----APAFGQTNTGFGGFGTTAGATQQSTLFGATPAADPNKSAFGLGTAASAATTGFG 427
            ....::|    ...|||||||||..||       ..|||..||        |.||..::|.:   
Zfish   342 NTNTSTATGFGTGIFGQTNTGFGNVGT-------QNLFGNKPA--------GFGTTTTSAPS--- 388

  Fly   428 FGAPATSTAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNSGLNKPATSG 492
            ||      :|.|||.|||..     |.|..:..||    ||.  |....|||||.   ||.|.:|
Zfish   389 FG------SGPGLFANKPTL-----TLGTNTNTST----FGF--SGTGAGGGLFG---NKTAATG 433

  Fly   493 FG-----GFGATSAAPLNFNAGNTGGSLFGNTAKPGGGLFGGGTTTLGGTGAAPTGGLFGGGTTS 552
            .|     ||||      ....|.|  |||||..|.|        :|||..               
Zfish   434 LGPVLGAGFGA------GVGTGQT--SLFGNNQKLG--------STLGSV--------------- 467

  Fly   553 FGGVGGSLGGGGFGMGTNNSLTGGIMGAQPTLGIMTPS-----HQPIHQQILARVTSPYGDSPIF 612
                 |:.|.|||..|.:....|   ..|..:.:..||     ...:.|||.|...||:||||:|
Zfish   468 -----GTFGAGGFNTGASTLNFG---APQQPIALTDPSAGAAQQAVLQQQISALAYSPFGDSPLF 524

  Fly   613 KDLKLS---SEADATRATNPAAQQAVLDLTSNQYKISTSNNPAP---MKVKALGSTLNRKS-LFD 670
            :: .||   .:.:..:.||||||:|:  .|..|||::    |.|   ::.|||.|:.:.|| |||
Zfish   525 RN-PLSDPKKKEERLKPTNPAAQKAL--TTPTQYKLT----PRPATRVRPKALSSSGSSKSQLFD 582

  Fly   671 GLEEFDASVE--GFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRPKGATPNKERESFS 733
            ||::.:.|:.  .|..:.|.|:||:|       ..|.||...::.|              ||:..
Zfish   583 GLDDDELSLNNGAFMPRKSIKKLVLK-------NLNNSSLYNNSLN--------------READD 626

  Fly   734 GAIPSEPLPPAGNSPGATNGRESQDNGRRESWLHPNNLEKVRQHNIQTGMDQGSPHNSTLNELVP 798
            .|.|||                           :|       |:.:...:|:|.|..:.:.    
Zfish   627 LASPSE---------------------------YP-------QNGLSLSLDEGEPREANME---- 653

  Fly   799 RKPLDTYRPSSTVRLSVSTIPENP-------------FEDQSSTIARRETFTSQQANESVLSNRS 850
            |:..|.        |.||....||             .:|..|....|.:.:.:...|:     |
Zfish   654 RRGEDD--------LEVSKFYTNPITKPIPHAQLSPLLQDTISEFNMRGSGSHRNGLEA-----S 705

  Fly   851 NE----AEDSAANQSRLAIEAAAAEAADDESHPTGIVLRRVGYYTIPSLDDLRSYLAEDGSCVVP 911
            :|    ||||...:....:|      |....||.||||.|||||||||:::|...|.|:|.|:|.
Zfish   706 SEDLSLAEDSIQEERDEELE------AQKPPHPAGIVLSRVGYYTIPSMEELGKMLNENGECIVE 764

  Fly   912 NFTVGREGYGNVFFGKEMDVAGLNLDEIVHFRNKEIIIYPDDENKPPIGQGLNRDAQVTLDQVWP 976
            |||:||:|||:|||..|:::..:.||||||||.||||:||||::|||:|:||||.|:||||.|||
Zfish   765 NFTIGRKGYGSVFFPGEVNLTNMILDEIVHFRRKEIIVYPDDKDKPPVGEGLNRRAEVTLDGVWP 829

  Fly   977 LDKTKHEAIKDPQRLLEMDWEGKLRRVCDKNDTRFIEYRPETGSWVFRVKHFSKYGLGDSDEEDE 1041
            .|||....||.|.||.||::||:|.....|...||:|||||||||||.|.|||||||.:||||:|
Zfish   830 NDKTTCCQIKSPDRLTEMNYEGRLEAASRKQGARFLEYRPETGSWVFEVAHFSKYGLQESDEEEE 894

  Fly  1042 L---PTDPKKAKIAT--------LEAQQRANAEKMT--LNSLRQAQKISEDAARNLDPKALVAGV 1093
            :   ..|.||.|.|.        |..||.|...:.|  |..|.:..::..|.| ::..:..|..:
Zfish   895 ISPAKLDLKKLKTAVPPGLAQLPLTQQQGAPQAQSTAVLELLSRVSELDSDMA-DITQEHPVESI 958

  Fly  1094 ASGFRPMDDTAEFLLMDKTQFFQAGGNSDFSMFDPPRQRPTITSPTAVLAQ--EMVGNEAHKMQL 1156
                  :||             :.|..:.|.......:.|....|.:..:|  ..:|...|.:|:
Zfish   959 ------LDD-------------EDGERTSFEENKLRSETPAENEPVSASSQIASSMGINPHTLQI 1004

  Fly  1157 MKSSFFVEDNAPEDEPMETTGRLLRHRKFFNVEPLVWKDGASESSSQYDFEHPS----------- 1210
            ||:|.|.:|:..:......:.:|:             :|.||..........||           
Zfish  1005 MKASLFADDDECDMFQEHVSSKLI-------------QDVASTKLLLSGAGRPSIGALLQNKFTS 1056

  Fly  1211 --------PALPIS--SSVSEASLMCDAHYEETSSMATGSIVAAVKETKFEMPVTKAFKFVCKPK 1265
                    |.:|.|  |.....||..:|.:....             ..|.:|....     :|.
Zfish  1057 GGGLFSQLPEVPFSGISQKLNKSLASEAAWPSLG-------------PSFLLPPPPP-----EPT 1103

  Fly  1266 VAPIKLRATTVPLPRSIAYEM-RDNWIADLGFYKGRSFKLSFGPQNSLVLPSTYNNMQN-LKEFT 1328
            :..:..|....|:|...:..: :...:.|...::||||::.:||..:||......::.: :||..
Zfish  1104 LRTVGARRLGGPVPLEASITLGKGRLLMDAALFRGRSFRVGWGPNWTLVHSGDQLSVTHPVKEPA 1168

  Fly  1329 GPSLPVSMVFAPRSATDLSPS-----VMQLVEFNMVKGNEGFRESIIPHLEVQLNDCLSVNVEGS 1388
            ..:|....:..|.....::.|     |.|:|.....:.:|.....:.| ||:.|... ::|.| .
Zfish  1169 AENLGFGFLPKPTKTKPITESPFKVRVEQVVGLEPKQSSESLSLYLRP-LEIGLKHS-TINTE-E 1230

  Fly  1389 ECPCIHPDSGTKLVSKH------FSESLKQRNAGLKEDYSVSVWSLLFALW---GDHDELVDLEK 1444
            .||.|.|..|...:..:      .::.:...:|||.  :...||:|..|||   ||.|  :|.|:
Zfish  1231 PCPFIQPAGGVDALHGYAEWIVEVNKDIGGSDAGLA--HWKQVWTLCAALWGRLGDRD--LDTEQ 1291

  Fly  1445 NSHYMVMC-RRNLLSEWLENTLLGKDLLSKKVS---THSYLEHMLDLLSCHRVNEACELAFSYDD 1505
            .|.|.... ||...|.||.:  ...:.:.::|.   ..|:.|.:...|:.|.:::||:|:....|
Zfish  1292 YSDYQQQLERRRSFSHWLSD--CAANCIEEEVGRALQRSHAEAVFSYLTGHCISKACKLSQKSGD 1354

  Fly  1506 ANLALVLSQLSSGAVFRLLMEEQLFAWQQSKSDKYIDLERLKMYMLAAGAPMMQSSHGAINLLEN 1570
            ..|:|:|||.......|.|:..||..|.:.::|.:|:.|||:::.|.||.|:.||:...||:...
Zfish  1355 HRLSLMLSQAVGSQFCRDLLALQLTDWNRMQTDSFIEEERLRIFALLAGKPVWQSTDCCINVCSE 1419

  Fly  1571 KNWLTALALQLWYFTAPTSSITDALNAYNDAFQAEE---CYAEPPKPSYRDA-----------PT 1621
            .:|...:|:.|||...||:|:.|||..|..|||..|   .||.||.|.|.|.           ..
Zfish  1420 LDWKRCVAVHLWYMLPPTASVADALTKYETAFQGSEEVKRYAGPPLPPYIDELELLGLDEDMDEI 1484

  Fly  1622 DTKKPVYDLRYHLLQLHSKRMHSLEETLNPITHTADAMDFRLSWLLLQTLRALGYRHCSPLTEAR 1686
            |:|||:||:.:|||:|:|.|.:||::.|:|.|.|||.:|:||||.|...|:||.|.|.:...:..
Zfish  1485 DSKKPLYDICFHLLKLYSDRHYSLQQLLDPSTVTADHLDYRLSWHLWSVLQALNYNHLATSCQGL 1549

  Fly  1687 LSVDFASQLENEGLWQWGIFVLLHIKQQTQRERAVQQMLQRNVSVSAKVALYAEERFIVEELGIP 1751
            |...:|:|||:.|||:..|||||||....:||.||::||..:.|:........:|:|:.|:|.||
Zfish  1550 LHASYAAQLESAGLWEMAIFVLLHITDSGRRESAVREMLSLHCSLEETEESMEKEQFLTEKLLIP 1614

  Fly  1752 MSWVDYAKAVKAGASGKHHLQAKYLLKAKHFATAHDVIFQHIAPDAIINGKMKYLHSLLIQFEDT 1816
            :.|:..|||::|...|..|.:|.:|.||.|:...|.::.||:|.|.|||...|||...|      
Zfish  1615 IQWIHQAKAIRACREGDKHREALHLYKAGHWNHCHRLVIQHLASDCIINDNHKYLLDFL------ 1673

  Fly  1817 EG-----SSIRVPNWANQGQIFLDFIDISAKFKQIRSVTNIADINARWENLKPQLSELCSRISLL 1876
            ||     .|:::..|...|::|||:|.:   .:.::.:..:.......|.|..:::.||:||.||
Zfish  1674 EGLAVPERSVQIQGWDTSGRVFLDYIHV---IQTLQDIQQMESPGYELERLHTEVTSLCNRIVLL 1735

  Fly  1877 PCPTSKHRLCQSEISQSLSCLVHGMCIV------CPEMESSTVLKVA--LERLPLPQEFASKELR 1933
            ||..:|.:|.|||:::.::.::..:..:      .|:.:...:.::|  :.|||:|:::|.:|||
Zfish  1736 PCSKAKDKLAQSEMAKRVANILRVVLSLQQGGEGTPDSQYIPLCQLASHIGRLPMPEDYALEELR 1800

  Fly  1934  1933
            Zfish  1801  1800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 28/85 (33%)
Nucleoporin2 888..1027 CDD:309287 85/138 (62%)
Nup96 1484..1762 CDD:314912 115/291 (40%)
Nucleoporin_FG <1..74 CDD:316182 27/65 (42%)
Nucleoporin_FG 50..164 CDD:316182 44/114 (39%)
Nucleoporin_FG 254..318 CDD:316182 30/69 (43%)
NupH_GANP 316..>522 CDD:318883 82/238 (34%)
nup98NP_956979.2 Nucleoporin_FG 39..133 CDD:290362 40/103 (39%)
Nucleoporin_FG 217..357 CDD:290362 54/156 (35%)
Nucleoporin_FG 324..>400 CDD:290362 35/99 (35%)
Nucleoporin2 741..881 CDD:282016 85/139 (61%)
Nup96 1333..1626 CDD:288926 115/292 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594685
Domainoid 1 1.000 217 1.000 Domainoid score I2627
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H35472
Inparanoid 1 1.050 795 1.000 Inparanoid score I488
OMA 1 1.010 - - QHG55353
OrthoDB 1 1.010 - - D156436at33208
OrthoFinder 1 1.000 - - FOG0003622
OrthoInspector 1 1.000 - - oto41597
orthoMCL 1 0.900 - - OOG6_101756
Panther 1 1.100 - - LDO PTHR23198
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 1 1.000 - - X1810
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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