DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and NCOA5

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_066018.1 Gene:NCOA5 / 57727 HGNCID:15909 Length:579 Species:Homo sapiens


Alignment Length:273 Identity:53/273 - (19%)
Similarity:94/273 - (34%) Gaps:92/273 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   599 LARVTSPYGDSPIFKDLKLSSEADATRATNPAAQQAVLD-LTSNQY------------------- 643
            :||..:...|..|.::.:.....:..|..:|.|.|:::: |..|:|                   
Human   309 IARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKER 373

  Fly   644 --KISTSNNPAPMKVKALGSTLNRKSLFDGLEEFDASVEGFNLK--PSAKRL---VIKPKVKSVE 701
              :.||.:.|.|:..:.||:|                 .|.:||  ||::.|   .:.|......
Human   374 LMRSSTDSLPGPISRQPLGAT-----------------SGASLKTQPSSQPLQSGQVLPSATPTP 421

  Fly   702 GGNPSS------------SIGS-APNTPQSRPKGATPNKERESFSGAIPSEP---LPPAGNSPGA 750
            ...|:|            :.|: ..|:..:.|..|..|...::||.|..|:|   ...:||.|.:
Human   422 SAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPS 486

  Fly   751 T--NGRESQDNGRRESWLHPNNLEKVRQHNIQTGMDQGSPHNSTLNE----LVPRKPLDTYRPSS 809
            .  .|..:|:.|.|                      .|:|......:    |.|...:.:.||.|
Human   487 ILGQGGSAQNMGPR----------------------PGAPSQGLFGQPSSRLAPASNMTSQRPVS 529

  Fly   810 TVRLSVSTIPENP 822
            :..::.    :||
Human   530 STGINF----DNP 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182
Nucleoporin2 888..1027 CDD:309287
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182
Nucleoporin_FG 50..164 CDD:316182
Nucleoporin_FG 254..318 CDD:316182
NupH_GANP 316..>522 CDD:318883
NCOA5NP_066018.1 Transcription repression 1..158
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..78
PRK12678 <32..>135 CDD:237171
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 148..173
HisS <186..256 CDD:223202
LXXLL motif 345..349 0/3 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..428 15/69 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 444..537 23/118 (19%)
Transcription activation 458..579 22/107 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 560..579
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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