DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and nup62l

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_001107068.1 Gene:nup62l / 563392 ZFINID:ZDB-GENE-030131-8491 Length:507 Species:Danio rerio


Alignment Length:689 Identity:155/689 - (22%)
Similarity:222/689 - (32%) Gaps:249/689 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 AFGLGTAASAATTGFGFGAPATSTAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAAT 476
            ||..|   ...|.||.||.|.|:.|             |...||....:|||            .
Zfish     2 AFNFG---QTGTGGFNFGTPKTTAA-------------ATTGFGVPQGSSTP------------A 38

  Fly   477 GGGLFNSGLNKPATSGFGG----FGATSAAPLNFNAGNTGGSLFG----NTAKPGGGLFGGGTTT 533
            ||| |:.|.|:|.|..||.    .....|.|...|....||..||    :|...||..|||....
Zfish    39 GGG-FSFGANQPQTQNFGNPPSQIAGLLAQPTQNNGSTQGGFSFGAQTQSTTAGGGFSFGGSLPK 102

  Fly   534 LGGTGAAP----TGGLFGGGTTSFGGVGGSLGG------------GGFGMGTNNSLTGGIMGAQP 582
            | .|.|||    ||...|..||   |.|.||||            |||..|........:..|||
Zfish   103 L-STPAAPQPATTGVSLGASTT---GTGFSLGGLTPQTTAAQQPMGGFSFGAPKVQAASVAPAQP 163

  Fly   583 T----LGIMTPSHQPIHQQILARVTSPYGDSPIFKDLKLSSEADATRATNPAAQQAVLDLTSNQY 643
            |    ||:     ||.                  ..|.|.:...|:.|:.          |:..:
Zfish   164 TPVLSLGV-----QPT------------------TGLSLGAPTAASIAST----------TAINF 195

  Fly   644 KISTSNNPAPMK--VKALGSTLNRKSLFDGLEEFDASVEGFNLKPSAKRLVIKPKVKSVEGGNPS 706
            .|.||..|||..  :.:..||....|||.. ......|.||.|..|...  :.|.:         
Zfish   196 GIKTSATPAPASTALSSQSSTAPVSSLFAN-PIASTPVTGFTLGSSTAS--VAPVM--------- 248

  Fly   707 SSIGSAPNTPQSRPKGATPNKERESFSGAIPSEPLPPAGNSPGATNGRESQDNGRRESWLHPNNL 771
            :|..|||.:...:|.||.|              .:..|..|.|||.|                  
Zfish   249 TSGSSAPASLSLKPLGAVP--------------AITTAAASTGATTG------------------ 281

  Fly   772 EKVRQHNIQTGMDQGSPHNSTLNELVPRKPLDTYRPSSTVRLSVSTIPENPFEDQSSTIARRETF 836
                   ...|:...:   ||        .|.:...:||..::.||.|                .
Zfish   282 -------FSLGLKTAA---ST--------ALASTTATSTTVVTASTAP----------------V 312

  Fly   837 TSQQANESVLSNRSNEAEDSAANQSRLAIEAAAAEAADDESHPTGIVLRRVGYYTIPSLDDLRSY 901
            .|....|::::..|:|.||    |.|..::.|....|.|.                        .
Zfish   313 MSYAQLEALINKWSSELED----QERHFLQQATQVNAWDR------------------------M 349

  Fly   902 LAEDGSCVVPNFTVGREGYGNVFFGKEMDVAGLN---LDEIVHF---RNKEI--IIYPDDEN-KP 957
            |.|:|..:..             ..|:|:...|:   ||:.:.|   :.||:  ::.|.:|: |.
Zfish   350 LVENGEKITA-------------LHKDMEKVKLDQRRLDQELDFILSQQKELEDLLSPLEESVKE 401

  Fly   958 PIGQGLNRDAQVTLDQVWPLDKTKHEAIK----DPQRLLE--------MDWEGKLRRVCDKNDTR 1010
            ..|....::|....::.:.|.:.....:|    |.:.::|        .|....|:::|     :
Zfish   402 QSGTIYMQNADEERERTYKLAENVDAQLKRMSQDLKEIIEHLNTSSGPADTADPLQQIC-----K 461

  Fly  1011 FIEYRPETGSWV--------FRVKHFSKYGLGDSDEEDE 1041
            .:....::..||        .||:..||.....|.|:::
Zfish   462 ILNAHMDSLQWVEQNSVLLQRRVEEVSKLCESRSKEQEK 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 20/68 (29%)
Nucleoporin2 888..1027 CDD:309287 27/167 (16%)
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182
Nucleoporin_FG 50..164 CDD:316182
Nucleoporin_FG 254..318 CDD:316182
NupH_GANP 316..>522 CDD:318883 35/117 (30%)
nup62lNP_001107068.1 Nsp1_C 313..414 CDD:282867 27/141 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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