DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and Nup62

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_444304.1 Gene:Nup62 / 18226 MGIID:1351500 Length:526 Species:Mus musculus


Alignment Length:542 Identity:140/542 - (25%)
Similarity:192/542 - (35%) Gaps:153/542 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   377 FGQTNTGFGGFGTTAGATQQSTLFGATPAADPNKSAFGLGTAASAATTGFGFGAPATSTAGGGLF 441
            ||.|....|||  |.|..:.:|   .|||...:.||.|.||.      ||.||.|:...|     
Mouse     6 FGGTGAPAGGF--TFGTAKTAT---TTPATGFSFSASGTGTG------GFNFGTPSQPAA----- 54

  Fly   442 GNKPATS-FAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNSGLNKPATSGFGGFGATSAAPLN 505
             ..|:|| |:..|  .|.|..||..|||   :|.|:||..|:.|::.|..|    ....:|.|..
Mouse    55 -TTPSTSLFSLTT--QTPTTQTPGFNFG---TTPASGGTGFSLGISTPKLS----LSNAAATPAT 109

  Fly   506 FNAGNTGGSLFGNTAKPGGGLFGGGTTTL------GGT---GAAPTGGLFGGGTTS--------F 553
            .|.|:                ||.|::||      |.|   |.||||.:||..|||        |
Mouse   110 ANTGS----------------FGLGSSTLTNAISSGSTSNQGTAPTGFVFGSSTTSAPSTGSTGF 158

  Fly   554 GGVGGSL---GGGGFGMGTNNSLTGGIMGAQPTLGIMTPSHQPIHQQILARVTSPYGDSPIFKDL 615
            ....||.   |..||.:|:..|      .||||....:|..........|..|.|...:|.....
Mouse   159 SFTSGSASQPGASGFSLGSVGS------SAQPTALSGSPFTPATLVTTTAGATQPAAAAPTAATT 217

  Fly   616 KLSSEADATRATNPAAQQAV-LDLTSNQYKISTSNNPAPMKVKALGSTLNRKSLFDGLEEFDASV 679
            ...|...|:.|..||:..|. |.|            |||:...|..|               |..
Mouse   218 SAGSTLFASIAAAPASSSATGLSL------------PAPVTTAATPS---------------AGT 255

  Fly   680 EGFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRPKGATPNKERESFSG-AIPSEPLPP 743
            .||:||              ..|..|.:|..|...|..:....|.......:.:| |:..:||..
Mouse   256 LGFSLK--------------APGAAPGASTTSTTTTTTTTTTTAAAAAASTTTTGFALSLKPLVS 306

  Fly   744 AGNSPGATNGRESQDN------------GRRESWLHPNNLEKVRQ--HNIQ----------TGMD 784
            ||.|..|.....:...            .:.||.::..:||...|  |.:|          |.::
Mouse   307 AGPSSVAATALPASSTAAGTATGPAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIE 371

  Fly   785 QGSPHNSTLNELVPRKPLDTYRPSSTVRLSVSTIPE-----NPFE----DQSSTI-------ARR 833
            .|....| |:..|.:..||..|....:...:|...|     :|.|    :||.||       .|.
Mouse   372 NGEKITS-LHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQSGTIYLQHADEERE 435

  Fly   834 ETFTSQQANESVLSNRSNEAED 855
            :|:...:..::.|...:.:.:|
Mouse   436 KTYKLAENIDAQLKRMAQDLKD 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 31/86 (36%)
Nucleoporin2 888..1027 CDD:309287
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182
Nucleoporin_FG 50..164 CDD:316182
Nucleoporin_FG 254..318 CDD:316182
NupH_GANP 316..>522 CDD:318883 47/145 (32%)
Nup62NP_444304.1 5 X 2 AA repeats of F-G. /evidence=ECO:0000250|UniProtKB:P37198 6..144 59/179 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..82 18/49 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..148 9/19 (47%)
Nsp1_C 318..433 CDD:282867 23/115 (20%)
Required for centrosome localization. /evidence=ECO:0000250|UniProtKB:P37198 332..462 27/127 (21%)
DUF4795 366..>505 CDD:292662 20/93 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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