DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup98-96 and npp-11

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_491232.1 Gene:npp-11 / 171954 WormBaseID:WBGene00003797 Length:805 Species:Caenorhabditis elegans


Alignment Length:777 Identity:262/777 - (33%)
Similarity:325/777 - (41%) Gaps:234/777 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFGGA--KPS-FGATPAAT------SFGGFS-------GTTTTTPFGQSAFGKPAAPAFGNTSTF 49
            ||||:  ||| ||.|.|.|      |||..|       |.|.||  |..:||. |.|:.|:|..|
 Worm     1 MFGGSAPKPSIFGGTAATTTASSGFSFGNSSTSTANTGGNTNTT--GGFSFGS-AQPSTGSTGLF 62

  Fly    50 AAQPAQQSLFG--AAATPAQPAGGLFG---------ANTSTGFGSTATAQPTA---FGAFSQPQQ 100
            ....|..|:||  :||.||..:.|:||         |:||. |||:|.:...|   ||| |.|..
 Worm    63 GNSTATGSMFGGSSAAAPAPASAGIFGNSGAAAPAPASTSI-FGSSANSAAPATVTFGA-SAPSA 125

  Fly   101 TSNIFGSTQTAAST-SLFGQSTLPAFGAAKPTMTAFGQTAAAQPTGSLFGQPAAATSTTGFGGFG 164
            .:.:||:.:.||.| .|||.||               .||...|||.|||...||.|:..||  .
 Worm   126 GAGMFGANKPAAPTGGLFGSST---------------STATTAPTGGLFGSSTAAPSSGLFG--S 173

  Fly   165 TSAPTTT-NVFGSGTASAFAQPQATAVGASGVNTGTAVAKYQPTIGTDTLMKSGQANSVNTKQHC 228
            |:||... .:||| |:::.|.|.....|:|...|.||.|   |:.|   |..:..|.|       
 Worm   174 TAAPAAPGGLFGS-TSTSTAAPSGGLFGSSAAPTSTAPA---PSGG---LFGAAPATS------- 224

  Fly   229 ITAMKEFEGKSLEELRLEDYMCGRKGPQAGNAPGAFGFGAQVTQPAQPA-SGGLFGST---AQPS 289
                                       .|....|.||..|    ||..| ||||||:.   |.||
 Worm   225 ---------------------------NAAPTSGLFGNSA----PAATASSGGLFGAAPKPAAPS 258

  Fly   290 TGLFGQTVTENKSMFGTTAFGQQPATNNAFGAATQQNNFLQKPFGATTTTPFAAPAADASNPFGA 354
            .||||.|.               |||..|...||      ...|||.|:.|.:|||  ....|||
 Worm   259 GGLFGSTA---------------PATTAATTTAT------SGLFGAPTSAPSSAPA--TGGLFGA 300

  Fly   355 K--PAFGQGGSLFGQAPATSAAPAFGQTNTGFGGFGTTAGATQQSTLFGATPAADPNKSAFGLGT 417
            .  ||...|| ||....|:::.|:.|.       ||.::.:|..:......|||......||..|
 Worm   301 STAPAAATGG-LFSIGAASASTPSVGL-------FGNSSASTTAAAAPATAPAAASTGGLFGATT 357

  Fly   418 AASAA----TTGFGFG----APATSTAGGGLFGNK-PATSFAAPT---FGATSTASTPFSNFGLN 470
            ||:||    |||..||    |||.|...|||||:. ||.:.||||   |||:||.:         
 Worm   358 AAAAAPTSSTTGGLFGSTAAAPAASLPTGGLFGSSTPAKTPAAPTAGLFGASSTTT--------- 413

  Fly   471 TSTAATGGGLFNSGLNKPATSGFGGFGATSAAPLNFNAGNTGGSLFG--------NTAKPGGGLF 527
            ||..|| |.||.:.   |||:     .||||||    |.:||| |||        :|| |.||||
 Worm   414 TSAPAT-GSLFGTA---PATT-----TATSAAP----AASTGG-LFGASSTTTPASTA-PTGGLF 463

  Fly   528 GGGTTTLGGTGAAPTGGLFGGGTTSFGGVGGSLGGGGFGMGTNNS-LTGGIMGAQPTLGIMTPSH 591
            |..||| ....|||||||||..||:.....|.. ||.||..|..: .|...:|..|:....||| 
 Worm   464 GAATTT-APAAAAPTGGLFGAATTTAPATVGPT-GGLFGAATTTTPATAATLGQTPSTVSATPS- 525

  Fly   592 QPIHQQILARVTSPYGDSPIFKDLKLSSEADATRATNPAAQQAV------LDLTSNQYKISTSNN 650
                   |...||                   |.:|.|...:|.      |.|||          
 Worm   526 -------LPTTTS-------------------TTSTLPKPAEATPTLGLGLGLTS---------- 554

  Fly   651 PAPMKVKALGSTLNRKSLFDGLEEFDASVEGFNLKPSAKRLVIKPKVKSVEGGNPSSSIGSA 712
             .|: .|..|.|.:      ||:....:..|..:..|....:.:.::|:..|||.:.:..:|
 Worm   555 -TPL-AKGTGWTTS------GLKGAATTSAGLKIGASGSDTLSEEEIKAGLGGNDTKAFFTA 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 40/97 (41%)
Nucleoporin2 888..1027 CDD:309287
Nup96 1484..1762 CDD:314912
Nucleoporin_FG <1..74 CDD:316182 37/90 (41%)
Nucleoporin_FG 50..164 CDD:316182 47/128 (37%)
Nucleoporin_FG 254..318 CDD:316182 25/67 (37%)
NupH_GANP 316..>522 CDD:318883 86/227 (38%)
npp-11NP_491232.1 Nucleoporin_FG 117..218 CDD:290362 46/125 (37%)
Nucleoporin_FG 220..328 CDD:290362 50/176 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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