Sequence 1: | NP_001262885.1 | Gene: | Nup98-96 / 42816 | FlyBaseID: | FBgn0039120 | Length: | 1960 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_004917948.2 | Gene: | mcm3ap / 100490007 | XenbaseID: | XB-GENE-981006 | Length: | 2384 | Species: | Xenopus tropicalis |
Alignment Length: | 2154 | Identity: | 454/2154 - (21%) |
---|---|---|---|
Similarity: | 708/2154 - (32%) | Gaps: | 759/2154 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 FGGAKP--SFGATPAATSFG---GFSGTTTTTP---FGQSAFGKPAAPAFGNTSTFAAQPAQQSL 58
Fly 59 FGAAATPAQPAGGLFGANTSTG----FGSTATAQPT-AFGAFSQPQQTSNIFGSTQTAASTSLFG 118
Fly 119 Q----STLPAFG---AAKPTMTAFGQTAAAQPTGSLFGQPAAATSTTGFGGFGTSAPTTTNVFGS 176
Fly 177 GTASAFAQPQATAVGASGVNTGTAVAKYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSLE 241
Fly 242 ELRLEDYMCGRKGPQAGNAPGAFGFGAQVTQPAQPASGGLFG--STAQPSTGLFGQTVTENKSMF 304
Fly 305 GTTAFGQQPA----------TNNAFGAATQQNNFLQKPFGATTTTPFAAPAADASNPFGAKPAFG 359
Fly 360 -----QGGSLFGQAPATSAAPAFGQTNTGFGGFGTTAGATQQSTLFGATPAAD----PNKSA--- 412
Fly 413 -------FGLGTAASAATT----GFGFGAP-ATSTAGGGL-FGNKPATSFAAPTFGATSTASTPF 464
Fly 465 SNFGLNTSTAATGGGLFNSGLNKPATSGFGGFGATSAAPLNFNAG----NTGGS---LFGNTAKP 522
Fly 523 GGGLFGGGTTTLGGTGAAPTGGLFGGGTTSFG--------GVGGSLGGGGFGMGTNNSLTGGIMG 579
Fly 580 AQPTLGIMTPSHQPI----------HQQILARVTSPYG-DSPIFKDLKLSSEADATRATNPAAQQ 633
Fly 634 AVLDLTSNQYKISTSNNPAPMKVKALGSTLNRKSLFDGLEEFDASVEGFNLKPSAKRLVIKPKVK 698
Fly 699 SVEGGNPSSSIGSAPNTPQSRPKGATPNKERESFSGAIPSEPLPPAGNSPGATNGRESQDNGRRE 763
Fly 764 SWLHPNNLEKVRQHNIQTGMDQGSPHNSTLNELVPRKPLDTYRPSSTVRLSVSTIPENPFEDQSS 828
Fly 829 TIARRETFTSQQANESVLSNRSNEAEDSAANQSRLAIEAAAAEAADDESHPTGIVLRRVGYYTIP 893
Fly 894 SLDDLRSYLAEDGSCVVPNFTVGREGYGNVFFGKEMDVAGLNLDEIVHFRNKEIIIYPDDENKPP 958
Fly 959 IGQGLNRDAQVTLDQVW--PLDKTKHEAIKDPQRLLEMDWEGKLRRVCDKNDTRFIEYRPETGSW 1021
Fly 1022 VFRVKHFSKYGLGDSDEEDELPTDPKKAKIATLEAQQR---ANAEKMTLNSLRQAQKISEDAARN 1083
Fly 1084 LDPKALVAGVASGFRPMDDTAEFLLMDKTQFFQAGGNSDFSMFDPPRQRPTITSPTAVLAQEMVG 1148
Fly 1149 NEAHKMQLMKSSFFVED----NAPEDEPMETTGRLLRHRKFFNVEPLVWKDGASESSSQYDFEHP 1209
Fly 1210 SPALPISSS-----VSEAS----LMCDAHYEETSSMATGSIVAAVKETKFEMPVTKAFKFVCKPK 1265
Fly 1266 VAPIK---LRATTVPLPRSIAYEMRDNWIADLGFYKGRSFKLSFGPQNSLVLPST--YNNMQNLK 1325
Fly 1326 EFTGPS------LPVSMVFAPRSATDLSPSVMQLVEFNMVKGNEGFRESIIPHLEVQLNDCLSVN 1384
Fly 1385 VEGSECPCIHPDSGTKLVSKHFSESLKQRNAGLKEDY------SVSVWSLLFALWGDHDELVDLE 1443
Fly 1444 KNSHYMVMCRRNLLSE-------WLENTLLGKDLLSKKVSTHSYLEHMLDL----LSCHRVNEAC 1497
Fly 1498 ELAF-SYDDANLALVLSQLSSGAVFR---------LLMEEQLFAWQ---QSKSDKYIDLERLKMY 1549
Fly 1550 MLAAGAPMMQSS--HGAINLLENKNWLTAL------------------ALQLWYFTAPTSSITDA 1594
Fly 1595 LNAY------------NDAFQAEECYAEPPKPSYRDAPTDTKKPVYDLRYHLLQLHSKRMHSLEE 1647
Fly 1648 TLNPITHTADAMDFRLSWLLLQTLRALG-YRHCSPLTEARLSVDFASQLENEGLWQWGIFVLLHI 1711
Fly 1712 KQQTQRERAVQQMLQRN------------------VSV-----------SAKVALYAEE------ 1741
Fly 1742 RFIVEELGIPMSW--VDYAKAVKAGASGKHHLQAKYLLKAKHFATAHDVIFQ---HIAPDAIING 1801
Fly 1802 KMKYLHSLLIQFEDTEGSSIRVPNWANQGQIFLDFIDISAKFKQIRSVTNIADINARWENLKPQL 1866
Fly 1867 S-ELCSRISLLPCPTSKHRLCQSEISQSLSCLVHGMCIVCPEMESSTVLKVALERLPLPQEFASK 1930
Fly 1931 ELRIWLEEL 1939 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nup98-96 | NP_001262885.1 | Nucleoporin_FG | 395..481 | CDD:316182 | 29/105 (28%) |
Nucleoporin2 | 888..1027 | CDD:309287 | 20/140 (14%) | ||
Nup96 | 1484..1762 | CDD:314912 | 74/364 (20%) | ||
Nucleoporin_FG | <1..74 | CDD:316182 | 25/79 (32%) | ||
Nucleoporin_FG | 50..164 | CDD:316182 | 43/125 (34%) | ||
Nucleoporin_FG | 254..318 | CDD:316182 | 23/75 (31%) | ||
NupH_GANP | 316..>522 | CDD:318883 | 61/237 (26%) | ||
mcm3ap | XP_004917948.2 | NupH_GANP | 6..290 | CDD:407035 | 112/395 (28%) |
NupH_GANP | 343..>581 | CDD:407035 | 61/275 (22%) | ||
RRM_SF | 809..880 | CDD:418427 | 21/110 (19%) | ||
SAC3_GANP | 1012..1306 | CDD:397460 | 83/404 (21%) | ||
CID_GANP | 1535..1605 | CDD:407033 | 18/86 (21%) | ||
MCM3AP_GANP | 1633..2371 | CDD:407036 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |