DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup98-96 and nup98

DIOPT Version :9

Sequence 1:NP_001262885.1 Gene:Nup98-96 / 42816 FlyBaseID:FBgn0039120 Length:1960 Species:Drosophila melanogaster
Sequence 2:NP_001265682.1 Gene:nup98 / 100145055 XenbaseID:XB-GENE-6450416 Length:1790 Species:Xenopus tropicalis


Alignment Length:2085 Identity:665/2085 - (31%)
Similarity:960/2085 - (46%) Gaps:453/2085 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FGGAKPSFGATPAATSFG---GFSGTTTTTPFGQSAFGKPAAPAFGNTSTFAAQPAQQSLFGAAA 63
            ||....:||||   ::||   || |||..|.||.:.||.       ||||       ..|||  .
 Frog    10 FGTGNGAFGAT---STFGQTTGF-GTTPATAFGSAGFGT-------NTST-------GGLFG--N 54

  Fly    64 TPAQPAGGLFGANTSTGFGSTATAQPTA-FGAFSQPQQTSNIFGSTQTAASTSLFG-QSTLPAFG 126
            |..:| |||||   ||.|...||:..:: ||..:....|:::||||.|  .:.||. ||.  |||
 Frog    55 TQTKP-GGLFG---STTFNQPATSSSSSGFGFGASTGTTNSLFGSTNT--GSGLFATQSN--AFG 111

  Fly   127 AAKPTMTAFGQTAAAQPTGSLFGQPAAATSTTG-FGGFGTSAPTTTNVFGSGTASAFAQPQATAV 190
            .|||  |.||....:..||.|||.    |:|.. |||      |:.::||:.|.||         
 Frog   112 QAKP--TTFGNFGTSTSTGGLFGN----TNTANPFGG------TSASLFGASTFSA--------- 155

  Fly   191 GASGVNTGTAVAKYQPTIGTDTLMKSGQANSVNTKQHCITAMKEFEGKSLEELRLEDYMCGRKGP 255
                ..|||.: |:.|..||||:.|.|...:::||..|||||||:|.|||||||||||...||||
 Frog   156 ----APTGTTI-KFNPPSGTDTMAKGGVTTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGP 215

  Fly   256 QAGNAPGAFGFGAQVTQPAQPASGGLFG---STAQPSTGLFGQTVTE-------NKSMFGTT--- 307
            |  |..||            |...||||   :|:..|||:||.|...       ||:.|||.   
 Frog   216 Q--NPVGA------------PTGTGLFGTSAATSSASTGIFGSTAANNSFSFAGNKTTFGTAGTG 266

  Fly   308 AFGQQPATNNAFGAATQQ--NNFLQKPFGATTTT-----------PFAAPAADASNPFGA-KPAF 358
            |||..  |...||....|  .:...||||..|||           ....|.......||| :|. 
 Frog   267 AFGGN--TGGLFGQPANQPAASLFNKPFGNATTTQSTGFSFGNTSTLGQPQTSTMGLFGANQPT- 328

  Fly   359 GQGGSLFGQAPATSAAPAFGQTNTGFG-----GFGTTAGATQQSTLFGATPAADPNKSAFGLGTA 418
             |.|.|||....|:|..|||...:.||     .|||      .|||||..||        |.||.
 Frog   329 -QSGGLFGTTTNTNATGAFGAGTSLFGQPNPAPFGT------GSTLFGNKPA--------GFGTT 378

  Fly   419 ASAATTGFGFGAPATSTAGGGLFGNKPATSFAAPTFGATSTASTPFSNFGLNTSTAATGGGLFNS 483
            .::        |||..|..||||||||..     |.|    .:|..||||..::||.|  .||. 
 Frog   379 TTS--------APAFGTTTGGLFGNKPTL-----TLG----TNTNTSNFGFGSNTAGT--SLFG- 423

  Fly   484 GLNKPATSGFGGFGATSAAPLNFNAGNTGGSL---FGNTAKPG-GGLFGGGTTTLGGTGAAPTGG 544
              ||.||                  |..|.||   ||....|| ..|||.....|.||       
 Frog   424 --NKTAT------------------GTIGPSLGTGFGTALNPGQTSLFGSNQPKLTGT------- 461

  Fly   545 LFGGGTTSFGGVGGSLGGGGFGMGTNNSLTGGIMGAQPTLGIMTPSHQPIHQQIL-----ARVTS 604
               .||.:||..|.:....|.|.|...:         |...:..|.....||..|     |...|
 Frog   462 ---LGTGAFGNAGFNSTSAGLGFGAPQA---------PVAALSDPGASAAHQMFLQQQYNALRYS 514

  Fly   605 PYGDSPIFK----DLKLSSEADATRATNPAAQQAVLDLTSNQYKISTSNNPAPMKVKALGSTLNR 665
            |:.|||:|:    |.|...|  ..:.||||||:||  ||...||: |....|.::.|||.::...
 Frog   515 PFPDSPLFRNPISDPKKKEE--LLKPTNPAAQKAV--LTPTHYKL-TPRPAARVRPKALQNSGAA 574

  Fly   666 KS-LFDGLEEFDASVEG--FNLKPSAKRLVIKPKVKSVEGGNPSSSIGSAPNTPQSRPKGATPNK 727
            || |||.|::.:..:..  |..|.|.|:|.:| .:|     |.||..|                :
 Frog   575 KSQLFDALDDDEPVLSSGVFMPKKSIKKLDLK-YLK-----NSSSLFG----------------Q 617

  Fly   728 ERESFSGAIPSEPLPPAGNSPGATNGRESQDNGRRESWLHPNNLEKVRQHNIQTGMDQGSPHNST 792
            |.......:|..|..|   .....|....::|....:..:|                  ||.:  
 Frog   618 ENRDVDDMVPPTPEAP---ERSVENHHGDEENDEEAATTYP------------------SPFS-- 659

  Fly   793 LNELVPRKPLDTYRPSSTVRLSVSTIPENPFEDQSSTIARRETFTSQQANESVLSNRSNEAEDSA 857
                   :||    |.|..:..|     |..:|         |..:....:|......:.:||::
 Frog   660 -------RPL----PQSQEKKQV-----NHMDD---------TIVALNMRKSGRIGLEHSSEDAS 699

  Fly   858 ANQSRLAIEAAAAEAADDESHPTGIVLRRVGYYTIPSLDDLRSYLAEDGSCVVPNFTVGREGYGN 922
            .|:...    ...|..|...||.||:|.|..||||||:::|...:.|:|.|:|..||:||||:|:
 Frog   700 FNEDSF----RETEILDASPHPAGIILTRDSYYTIPSMEELARSVDENGECIVNGFTIGREGFGS 760

  Fly   923 VFFGKEMDVAGLNLDEIVHFRNKEIIIYPDDENKPPIGQGLNRDAQVTLDQVWPLDKTKHEAIKD 987
            ::|...:::..|:||.|||.|.||:|:|.||:||||:|:||||.||||||:|||:|||....|..
 Frog   761 IYFEGIVNLTNLDLDSIVHIRRKEVIVYVDDQNKPPLGEGLNRPAQVTLDEVWPIDKTSRCMITS 825

  Fly   988 PQRLLEMDWEGKLRRVCDKNDTRFIEYRPETGSWVFRVKHFSKYGLGDSDEEDEL--PTDPKKAK 1050
            |:||.||:::.||.....|...:|::||||:|||||:|.|||||||.||||||:.  ..:.||.|
 Frog   826 PERLSEMNYKSKLENASRKQGAQFVDYRPESGSWVFKVNHFSKYGLQDSDEEDDQLNSAEAKKLK 890

  Fly  1051 IATLEAQ------QRANAE-KMT-------LNSLRQAQKISEDAARNLDPKALVAGVASGFRPMD 1101
            .|.:..|      |:|... |:|       ::.|.:..::..|.|.....:.|           |
 Frog   891 TAPVPPQGKQPPLQQATLPGKVTPPPQSPAVDQLDRVMELDSDMADITQDQDL-----------D 944

  Fly  1102 DTAEFLLMDKTQFFQAGGNSDFSMFDPPRQRPTITSPTAVLAQEMVGNEAHKMQLMKSSFFVEDN 1166
            ..||              ..|.|    ..|.|  .|.::.:|..: |...|.:|:||:|..:|: 
 Frog   945 SVAE--------------EQDIS----EEQEP--LSASSHIASSL-GINPHALQVMKASLLLEE- 987

  Fly  1167 APEDEPMETTGRLLRHRKFF--NVEP--------LVWKDGASESSS----QYDFEHPSPALPISS 1217
              ||      |.::.....|  :::|        |.....|...||    |..|..||     .|
 Frog   988 --ED------GEIMSRFSSFPSSMDPYPDVRSPRLFPSSHAKRPSSIGLLQSKFSAPS-----MS 1039

  Fly  1218 SVSEASLMCDAHYEETSSMATGSIVAAVKETKFEMPVTKAFKFVCKPKVAP--------IKLRAT 1274
            .:||.  :..:|..:....|..|:.|         |:..:|   ..|..||        .:.:..
 Frog  1040 RLSET--VQGSHSPKIHPAAPWSVPA---------PLAPSF---IMPGPAPDTHLRTVGTRRQQE 1090

  Fly  1275 TVPLPRSIAYEMRDNWIADLGFYKGRSFKLSFGPQNSLVLPSTYNNMQNLKEFTG-------PSL 1332
            .|||.:|:.:. |...:.|:|.:.||||::.:||..:||     :|...|.|...       .::
 Frog  1091 LVPLEKSVTHG-RGTLMIDMGLFMGRSFRVGWGPNWTLV-----HNGDKLSERLNAEEDRDMDTI 1149

  Fly  1333 PVSMVFAPRSATDL--SPSVMQLVEFNMVKGNEGFRESIIPHLEVQLNDCLSVNVEGSECPCIHP 1395
            ....:..|.||..|  ||..:.:.:.::.:..:..:..::| ||::|.:. :|:..| .||...|
 Frog  1150 DYGFLPKPTSAKSLTESPFKVHVEKLSLEQKTKDLQSYLLP-LEIELKNS-TVDKSG-PCPHFRP 1211

  Fly  1396 DSGTKLVS------KHFSESLKQRNAGLKEDYSVSVWSLLFALWGDHDEL---VDLEKNSHYMVM 1451
            :.|...:.      ::||....:..|.:|: :.:: |:|..:|||...||   :| |.|.:...:
 Frog  1212 NPGVTAIHDYAGWVRNFSSEAAEVEAVVKQ-WGLT-WTLCESLWGQLKELEASLD-EPNEYVKNL 1273

  Fly  1452 CRRNLLSEWLENTLLGKDLLSKKVSTHS---YLEHMLDLLSCHRVNEACELAFSYDDANLALVLS 1513
            .||...|.||..|  .::.:.::||.:.   ::|.:...|:..|:::||.||....|..|:|:||
 Frog  1274 ERRKAFSHWLAQT--AQERIEEEVSLYGPERHIEAVFSYLTGGRISDACRLAQKSGDHRLSLLLS 1336

  Fly  1514 QLSSGAVFRLLMEEQLFAWQQSKSDKYIDLERLKMYMLAAGAPMMQSS-HGAINLLENKNWLTAL 1577
            |:......|.|:..||..|.:.:.|.||..|||:::.|.:|.|:.:|| :.:||:....:|...|
 Frog  1337 QMVGSQEVRDLITLQLVDWNKLQVDHYIQEERLRVFCLLSGTPVWRSSDNRSINVCSQLDWKRTL 1401

  Fly  1578 ALQLWYFTAPTSSITDALNAYNDAFQAEE------CYAEPPKP-----SYRDAPTDTKKPVY-DL 1630
            .:.|||...||:::..||:.|..|||.:|      ||..||..     |:.|.|:.....:. |:
 Frog  1402 GIHLWYMLPPTATVAQALHMYEQAFQEQEGGEPYACYPLPPYLEDCGFSFGDDPSAKFCSLQRDV 1466

  Fly  1631 RYHLLQLHSKRMHSLEETLNPITHTADAMDFRLSWLLLQTLRALGYRHCSPLTEARLSVDFASQL 1695
            ..|||:|:|:|.:.|.:.|:|.:.|.|.:|:||||.:...|:||.|.|.|...:..|...:|:||
 Frog  1467 CVHLLKLYSERQYDLCQLLDPSSATPDPLDYRLSWHMWMVLQALNYTHLSGHRQGMLHASYAAQL 1531

  Fly  1696 ENEGLWQWGIFVLLHIKQQTQRERAVQQMLQRNVSVSAKVALYAEERFIVEELGIPMSWVDYAKA 1760
            ||.|||:|.|||||||:....||.||:::|.|:..|.......|:|.|:::.|.:|..|:..|||
 Frog  1532 ENVGLWEWAIFVLLHIQDPHVREAAVRELLNRHCVVHDSPESLAKENFLIQRLCLPAQWIHKAKA 1596

  Fly  1761 VKAGASGKHHLQAKYLLKAKHFATAHDVIFQHIAPDAIINGKMKYLHSLLIQFEDTEGSSIRVPN 1825
            |::...|..|.:|.||||:..:...|.::.:|:|.||:||...:||...|.:....|... .:.:
 Frog  1597 VRSRRDGDKHKEALYLLKSHQWNQCHKLVTRHLAADAVINENYRYLRGFLGELARPEHCK-HIQD 1660

  Fly  1826 WANQGQIFLDFIDISAKFKQIRSVTNIAD--INARWENLKPQLSELCSRISLLPCPTSKHRLCQS 1888
            |...|:::||:|.:.....|||.     |  .....|.|..::..||..:.|:.|.::|.||.||
 Frog  1661 WETAGKVYLDYISVIEMLNQIRQ-----DECSGGELEKLHTKVMSLCKWVELIQCYSAKGRLAQS 1720

  Fly  1889 EISQSLSCLVHGMCIVC-----PE--MESSTVLKVALE-------RLPLPQEFASKELR----IW 1935
            |:::.::.::.   :|.     ||  .:||:..:|.|.       |||:|:::|.:|||    .:
 Frog  1721 EMAKRVANILR---VVLSLQQPPESMSDSSSEPRVPLRLLAPHIGRLPMPEDYALEELRGLTQSY 1782

  Fly  1936 LEELL 1940
            |.||:
 Frog  1783 LRELI 1787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup98-96NP_001262885.1 Nucleoporin_FG 395..481 CDD:316182 32/85 (38%)
Nucleoporin2 888..1027 CDD:309287 73/138 (53%)
Nup96 1484..1762 CDD:314912 107/290 (37%)
Nucleoporin_FG <1..74 CDD:316182 30/74 (41%)
Nucleoporin_FG 50..164 CDD:316182 46/116 (40%)
Nucleoporin_FG 254..318 CDD:316182 27/76 (36%)
NupH_GANP 316..>522 CDD:318883 74/227 (33%)
nup98NP_001265682.1 Nucleoporin_FG 27..149 CDD:290362 61/158 (39%)
Nucleoporin_FG <216..323 CDD:290362 36/122 (30%)
Nucleoporin_FG 272..394 CDD:290362 48/145 (33%)
Nucleoporin_FG 355..468 CDD:290362 57/176 (32%)
Nucleoporin2 727..866 CDD:282016 73/138 (53%)
Nup96 1307..1600 CDD:288926 108/292 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 191 1.000 Domainoid score I3196
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H35472
Inparanoid 1 1.050 720 1.000 Inparanoid score I623
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D156436at33208
OrthoFinder 1 1.000 - - FOG0003622
OrthoInspector 1 1.000 - - oto103242
Panther 1 1.100 - - LDO PTHR23198
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1810
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.160

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