DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tst and obe

DIOPT Version :9

Sequence 1:NP_001262884.1 Gene:tst / 42813 FlyBaseID:FBgn0039117 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_650472.2 Gene:obe / 41891 FlyBaseID:FBgn0038344 Length:2183 Species:Drosophila melanogaster


Alignment Length:960 Identity:204/960 - (21%)
Similarity:348/960 - (36%) Gaps:292/960 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 VFVAAHTSAGKTVVAEYAI--ALSKRDLTRTIYTSPIKALSNQKYRDFRKTFK--DVGL----IT 336
            |.:.|.|.:|||:|||.||  ||::....:.:|.:|:|||..::..|:.:.|:  .:||    :|
  Fly  1355 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELT 1419

  Fly   337 GDLQIEPTA---SCLIMTTE-----ILRSMLYCGSDVTRDLEWVIFDEVHYINNPERGHVWEEVI 393
            ||:..:..|   |.||:||.     |.||  :...:..:.:..::.||:|.:.. :||.|.|.::
  Fly  1420 GDVTPDIQAIRESQLIVTTPEKWDGISRS--WQTREYVQHVSLIVIDEIHLLGE-DRGPVIEVIV 1481

  Fly   394 I---LLPEH----VNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPL-THFLYTGAGGK 450
            .   .:..|    :.|:.||..:.|..:||:|:| ..|..:|......||||| .|.        
  Fly  1482 SRTNFISSHTGRAIRIVGLSTALANAQDLANWLG-INKMGLYNFKPSVRPVPLQVHI-------- 1537

  Fly   451 SRDDIFLLVDAQGKYLQGNYEKAVERKKEMQGKAKGGGGGPRNHL---NAKQEQYTWIGLIDFLR 512
                                                 .|.|..|.   .|...:.|:..:..:  
  Fly  1538 -------------------------------------NGFPGKHYCPRMATMNRPTFQAIRTY-- 1563

  Fly   513 RSNMMPVVAFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLV---- 573
             |...|.:.|..||.:     ..|.::||.|.....:..|.||..      |:..|..:|.    
  Fly  1564 -SPCEPTIVFVSSRRQ-----TRLTALDLITFVAGESNPKQFLHI------PEDEIELILQNIRE 1616

  Fly   574 --LKDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDG 636
              ||..|..|||:||:|:....::.||.||.|..:::|.||.|.|.|||:||..||....:.|||
  Fly  1617 QNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDG 1681

  Fly   637 LEMR--NLKPGEYIQMAGRAGRRGHDETGTAIIMC--------KGSVPPSMELRPMILG-LPEKL 690
            ...:  ::...:.:||.|||||...|..|.|:::.        |..:.....:...:|| |||.:
  Fly  1682 KVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHI 1746

  Fly   691 QSQFI-------------LRYAVILTCL-------RIESIKVEDIMKFSFKEFNLKLQLPTQQKQ 735
            .::.:             |.:......|       :::.|:.|::..|.   .||..::..:...
  Fly  1747 NAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQLQDIEPENVNNFM---SNLVERVVYELSA 1808

  Fly   736 LR-LAEDKFAMLPTLGEHLQPLVNFYDKAVEYWKEKHRIMKFVVTQPKIQKELKAGRVIVITQGK 799
            .. |.|....::||          |..:...|:...:|.||..:      ::|:.|         
  Fly  1809 AACLVERDGCLIPT----------FLGRISSYYYLSYRTMKHFL------EDLQPG--------- 1848

  Fly   800 HYNKLAILLNTKSVPGKDTIYKVLVLDHQFKAKDSNSLQQGELYYKILSLTPRNMTFQPVGIGGH 864
                    :|||         |||:                                        
  Fly  1849 --------MNTK---------KVLL---------------------------------------- 1856

  Fly   865 TVLDIKAIDIISITKSTLKVDADAIIRNWEQRQLERFKDSPPSGSVVKAVTELNQLNESYI--DN 927
            .:.|....|.:.:..:..|       .|.|..::.||:  |||.|...:.|:...|.:::.  .:
  Fly  1857 AIADSYEFDQLPVRHNEDK-------HNEEMAEVSRFR--PPSSSWDSSYTKTFLLLQAHFARQS 1912

  Fly   928 PDNIKYVNLSKEIIVNADSEV-AMLNY------------VDHLLRKV--------GEFL------ 965
            ..|..|:..:|..:.||...: ||::|            |..|::.|        .|||      
  Fly  1913 LPNSDYLTDTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQARWFDGSEFLTLPGVN 1977

  Fly   966 ----------PHTNIAGFEQEFAKVYERRMLEIHIEELRFKNSARNLTLYPDYCNKLKVLRALKY 1020
                      ||.:.........|...::..|:..:.||            |...:.::.:..|.
  Fly  1978 EDNLDAFLNIPHDDYDYLTLPVLKELCKQEYEVLAKPLR------------DAFEEHEIEKMYKV 2030

  Fly  1021 IDELDEVTLKGKVACEMGQNELLITELILCN----------------MFNDLEPAEIAALLSGLV 1069
            |.:|.|:.::..|.....:||.....|.|.:                :..:|:...::....| .
  Fly  2031 IQDLPEIAIQIFVEGRHMENEYAKRPLSLSDDTRGEWMSLHANEDYVLIVNLQRLNVSGQRRG-G 2094

  Fly  1070 FQAKMQDKPVIPEALKEC--VAAFEQINDTILAEEQRFQAAIETDNRLNF 1117
            .|:.....|..|:...|.  :....|.||.:||.::.........||::|
  Fly  2095 GQSYTVHCPKYPKPKNEAWFLTLGSQANDELLAMKRVSIRGQRCTNRISF 2144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tstNP_001262884.1 Dob10 193..1194 CDD:226947 204/960 (21%)
DEAD 267..414 CDD:278688 46/156 (29%)
HELICc 578..658 CDD:197757 34/81 (42%)
rRNA_proc-arch 715..996 CDD:289976 53/320 (17%)
DSHCT 1025..1188 CDD:285374 20/111 (18%)
obeNP_650472.2 BRR2 450..1254 CDD:224125
DEAD 488..666 CDD:278688
HELICc 790..866 CDD:197757
Sec63 989..1296 CDD:280962
DEXDc 1332..1532 CDD:214692 54/180 (30%)
DEAD 1338..1510 CDD:278688 46/157 (29%)
HELICc 1605..1704 CDD:197757 37/98 (38%)
SEC63 1818..2176 CDD:214744 72/431 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466321
Domainoid 1 1.000 45 1.000 Domainoid score I721
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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