DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tst and mus301

DIOPT Version :9

Sequence 1:NP_001262884.1 Gene:tst / 42813 FlyBaseID:FBgn0039117 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_648178.1 Gene:mus301 / 38905 FlyBaseID:FBgn0002899 Length:1051 Species:Drosophila melanogaster


Alignment Length:1188 Identity:250/1188 - (21%)
Similarity:421/1188 - (35%) Gaps:386/1188 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 ANANNSMSMQREPGLLEDATRGSHSNFP-----FWPGGFDE---------------QRQQIAALD 120
            ||.:| :..:|...|.|::|..||:...     |||.|.|:               :::::    
  Fly     2 ANKHN-LCKKRSLDLSEESTSESHAKRQCTENLFWPEGEDDDSFFSNAHLEDLLDGRKEEL---- 61

  Fly   121 VSNFQFGDKLLT-----VPPGFSSGYDFFQSQSV----TLPPVVA----------DPSNVDLL-- 164
                 ||.:..|     ...|...|...|...|.    ::||..|          |...:||.  
  Fly    62 -----FGTQATTSTNKMTQSGSDDGLGLFADTSFPSAQSVPPNSASKPDEASAPTDKHQIDLADE 121

  Fly   165 ENLEQ--------DLDVQEWMKLTRSEETSSTGTPKSPKQSNVQL------------PSEEFRDV 209
            ||.::        ||.:.|...:....:..|     .|...|.||            |.:....:
  Fly   122 ENADKLFKKINLNDLSIAEMEDIFHGADDFS-----DPMVQNTQLFLDAMTFKKPKTPEKLLAPL 181

  Fly   210 DDHIMKADLKPVL------NISTTTKNFKS-------DW-----AEMVDISQPINNFKEQIPCPA 256
            .|..|....|.|:      ....|.:..|:       :|     |:....:|.|:.|      |:
  Fly   182 KDDSMSFISKSVIEGLVQGTQYVTCEELKNQSLLDPVNWETQAFADFEKNNQDIDKF------PS 240

  Fly   257 MDFPFELDVFQKQAILK-------------------LEQRQYVFVAAHTSAGKTVVAEYAIALSK 302
            ....:.|....|:.||:                   :.||:.:..|..||.|||:|||   .|..
  Fly   241 KGEFYGLPDKVKKMILEHKGINSLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAE---ILML 302

  Fly   303 RDL----TRTIYTSPIKALSNQKYRDFRKTFKDVGLIT-------GDLQIEP---TASCLIMTTE 353
            |:|    ...::..|..::..:|.........|:..|.       |....:|   ..|..|.:.|
  Fly   303 RELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIE 367

  Fly   354 ----ILRSMLYCGSDVTR--DLEWVIFDEVHYINNPERGHVWEEV---IILLPEHVNIIMLSATV 409
                ::.|::    ||.|  ::..|:.||:|.|....||...|..   ::.|..::.|:.:|||:
  Fly   368 KGAVLMDSLI----DVQRPHEIGLVVVDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATI 428

  Fly   410 PNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTG-------AGGKSRDDIFLLVDAQGKYLQ 467
            .|..|::.::.:....:.:      |||.|..::..|       :.|::.::||:    ..:.::
  Fly   429 GNLSEISSFLNADVYTRGF------RPVELKEYIKCGPDLLEINSAGQTLEEIFV----PSRSVE 483

  Fly   468 GNYEKAVERKKEMQGKAKGGGGGPRNHLNAKQEQYTWIGLIDFLRRSNMMP---VVAFTLSRNRC 529
            .||.:||:|             ...:||         .|||     |...|   .:.|..||..|
  Fly   484 YNYSEAVKR-------------ADPDHL---------AGLI-----SECAPEHCCLVFCPSRKNC 521

  Fly   530 DSNLAALQSVDLNTEK--EKGAVQKF-FLQCLAK----LKPPDRTIPQVLVLKDALERGIGVHHS 587
            : |:|.|.|..:...|  |....:|. .:..|.|    |.|         ||...|..||..|||
  Fly   522 E-NVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSP---------VLAKTLPYGIAYHHS 576

  Fly   588 GILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGEYIQMAG 652
            |:....::.:|..::.|:|.::..|.|.|.|||:||:.|:..:  .:.|.|...|  .:|.||.|
  Fly   577 GLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRA--PYVGQEFLTL--CKYKQMVG 637

  Fly   653 RAGRRGHDETGTAIIMCKGS---VPPSMELRPMILGLPEKLQSQFILRYAVIL------------ 702
            ||||.|..|.|.:|::.:..   :...|...||...|....|::.:...::||            
  Fly   638 RAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVGLNLAECRR 702

  Fly   703 --------TCLRIESIKVE--------DIMKFSFKEFNLKLQLPTQQKQLRLAEDKFAMLPTLGE 751
                    |.|.:::..:|        .|::..||  |..|||...|.:.::..........:.:
  Fly   703 DLNRLVNSTLLSVQAKSLEVAVNEIVLRILREMFK--NKVLQLAEPQAKSKINSSDIITSQDVSQ 765

  Fly   752 HLQP---------------LVNF----YDKAVEYWKEKHRIMKFVVTQPKIQKELK-AGRVIVIT 796
            ..:|               |.|.    :...::|.:..           .|.|||| |.:.:::|
  Fly   766 ANRPAGDRRLLIGQSTPFKLTNIGRAAFKAGIDYKRAN-----------AIHKELKQAQQQLILT 819

  Fly   797 QGKHYNKLAILLNTKS-----VPGKDTI----YKVLVLDHQ----------------FKAKDSN- 835
            ...|...|.:..|:..     .|...:|    |..|.||.|                ||.:... 
  Fly   820 NYLHLLYLVVCFNSNERGDELFPADASILFGVYTSLPLDSQAMFKQLGFTEAHAARLFKTQSVQG 884

  Fly   836 --SLQQGELYYKILSLTPRNMTFQPVGIGGHTVLDIKAIDIISITKSTLKVDADAIIRNWEQRQL 898
              |||...| ||:|.|.                      ||:::    |.:.:.|...|.|:..|
  Fly   885 PLSLQLNRL-YKVLILA----------------------DILNL----LPIPSVASKYNVERGTL 922

  Fly   899 ER-FKDSPPSGSVVKAVTELNQLNESYIDNPDNIKYVNLSKEIIVNADSEVAMLNYVDHLLRKVG 962
            :. ...|..:.|.:..:.|  :|.|.:...|       |.:.|:              |.:.:.|
  Fly   923 QHLISQSTAAASAIVRLCE--ELEEFWCYKP-------LFERIL--------------HKMDRCG 964

  Fly   963 EF-------LPHTNI--------AGFEQ--EFAKVYERRMLEIHIEELRFKNSARNLTLYPDYCN 1010
            .|       ||...|        |||:.  :.|:|....::: .:|.:       .|.:..:..:
  Fly   965 TFELEPLMELPAVKINRARQLYAAGFQTIGDIARVRPSHLVQ-SLEHM-------PLRVATEIVS 1021

  Fly  1011 KLKVLRALKYIDELDEVT 1028
            ..|:: .:|.:|.|:|.|
  Fly  1022 AAKII-LMKKLDHLEEET 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tstNP_001262884.1 Dob10 193..1194 CDD:226947 217/1022 (21%)
DEAD 267..414 CDD:278688 44/188 (23%)
HELICc 578..658 CDD:197757 30/79 (38%)
rRNA_proc-arch 715..996 CDD:289976 66/346 (19%)
DSHCT 1025..1188 CDD:285374 2/4 (50%)
mus301NP_648178.1 BRR2 247..998 CDD:224125 190/871 (22%)
DEXHc_POLQ-like 247..449 CDD:350784 46/214 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466320
Domainoid 1 1.000 45 1.000 Domainoid score I721
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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