DRSC/TRiP Functional Genomics Resources

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Protein Alignment tst and Ddx60

DIOPT Version :9

Sequence 1:NP_001262884.1 Gene:tst / 42813 FlyBaseID:FBgn0039117 Length:1197 Species:Drosophila melanogaster
Sequence 2:NP_001280712.1 Gene:Ddx60 / 234311 MGIID:2384570 Length:1710 Species:Mus musculus


Alignment Length:995 Identity:205/995 - (20%)
Similarity:343/995 - (34%) Gaps:371/995 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 DVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAI--ALSKRDLTRTIYTSPIKALSNQ-----K 321
            |.:|::.:..::..:...:.|.||:|||..:.|.:  .|.:.|....:|.:|.|||.||     :
Mouse   763 DTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESDEGVVVYVAPTKALVNQVAATVE 827

  Fly   322 YRDFRKTFKD----VGLITGDLQIEPTASCLIMTT-----EILRSMLYCGSDVTRDLEWVIFDEV 377
            || :.|....    .|:.|.|.: ....:|.::.|     |||....:..:.|.| :.:||||||
Mouse   828 YR-YAKNMPAGESLCGVFTRDYR-HDALNCQVLITVPACFEILLLAPHRQNWVKR-IRYVIFDEV 889

  Fly   378 HYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKVYVISTL--------- 433
            |.:.......:||.:::::  ....:.||||:.|...|.:|:.|.|:....|.||:         
Mouse   890 HCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPQHLTEWLQSVKRYWKQVDSTMEERTVSKRT 952

  Fly   434 --------------------------KRPVPLTHFLYTGAGGKSRDDIF-----LLVDAQGKY-- 465
                                      :|...|..:|.:...|....|.|     |.:|...||  
Mouse   953 GTSRGSYYKDQAQARQSYKVRLVLYGERYNDLEKYLCSVRQGDVCFDHFHPCAALTIDHIEKYGF 1017

  Fly   466 -----------LQ-------------------------------------GNYEKAVERKKEMQG 482
                       :|                                     ..||:::  |:|...
Mouse  1018 PSDLALSPRESIQLYDTMCQVWKSWPQAQSLCPENFTQFKNKIVIKKLDARKYEESL--KEEFTN 1080

  Fly   483 KAKGGGG----------GPRNHLNAKQEQYTWIGLIDFLRRSNMMPVVAFTLSRN---RCDSN-- 532
            ..|.|..          .|..|.::.:....:..|::.||:...:|.:.|....|   .|..|  
Mouse  1081 WVKNGNEEEARMVLKKLSPDYHEHSGRMLDFFPCLVEKLRKMEKLPALFFLFKLNIVEECAENAF 1145

  Fly   533 ----------------------LAALQSVDLNTEKEKGAVQK-------------------FFLQ 556
                                  ...|:.|..:.||:|...:|                   :.||
Mouse  1146 EFLEKKQEEKRPPKADKEARTTANKLRKVKKSLEKQKTVDEKGQKSSRRLDESVMHETEHNYLLQ 1210

  Fly   557 CLAK-LKPP------------DRTIPQVL----------VLKDALERGIGVHHSGILPILKEIVE 598
            .|.| |:.|            |:.:.:|.          .||...|||||.|||.:....|::||
Mouse  1211 TLEKNLEIPKDCTYANQKAIDDQLLQRVFHRVRFERKGETLKRLAERGIGYHHSSMSAKEKQLVE 1275

  Fly   599 MLFQNGLVKLLFATETFAMGVNMPARTVVF-DSCKKFDGLEMRNLKPGEYIQMAGRAGRRGHDET 662
            :||:.|.::::.||.|.|:|:|||.::||| .:....|.|        .|.||:|||||||.|..
Mouse  1276 ILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDAL--------NYRQMSGRAGRRGQDLL 1332

  Fly   663 GTAII----------MCKGSVPPSMELRPMILGLPEKLQSQFILRYAVILTCLRIESIKVEDI-- 715
            |....          :.|..||              :|:.||.|..::||..:.:.| |.:|:  
Mouse  1333 GDVYFFDIPLPKIGKLIKSKVP--------------ELRGQFPLSISLILRLMLLAS-KADDLED 1382

  Fly   716 --------------------------------MKFSFKEFNL----------------------- 725
                                            ::|..||.::                       
Mouse  1383 GKAKALSVLKHSLLSFKQPRAIDMLKLYFLYSLQFLVKEGHIDQEGNPTGFAGLVSHLHYHEPSN 1447

  Fly   726 -------------KLQLPTQQKQLRLAEDKFAMLPTL-----GEHLQPLVNFYDKAVEYWKEK-- 770
                         ||..||::...|.:||....|..:     |....| ..||:...::::.|  
Mouse  1448 LVFVSFLVKGLFHKLCQPTREGPKRFSEDVMEKLVLVLANLFGRRYIP-AKFYEVNSKFYQSKVF 1511

  Fly   771 ---------HRIMKF--VVTQPKIQKELKAGRVIVITQ------------GKHYNK---LAILLN 809
                     |.::::  .||:......|...|:..:.|            ||....   ::.|:|
Mouse  1512 LDDLPEDFSHALLEYNTQVTEDFASFLLMVSRLADMKQEYQLSLSKIEFTGKECEDSPLVSHLMN 1576

  Fly   810 TKSVPGKDTIYKVLVLDHQFKAKDSNSLQQGELYYKILSLTPRNMTFQPVGIGGHT---VLDIKA 871
            .|.  |:..:...:.|...|   |.:.|..|         .|.::....:|| .||   ||...|
Mouse  1577 CKE--GRVAVSPFVCLSGNF---DVDLLSPG---------VPNHVILHTLGI-NHTQAPVLWPYA 1626

  Fly   872 IDIISITKSTLKVDADAIIRNWEQRQLERFKDSPPSGSVVKAVTELNQLN--ESYIDNPD---NI 931
            :|     ....|:..:|.       .|:.:|    .||::..|.: |:::  |:|....|   .|
Mouse  1627 LD-----SQGRKIPLNAY-------ALDFYK----HGSLIGLVQD-NRIHPGEAYSLLKDFNLII 1674

  Fly   932 KYVNLS-KEIIVNADSEVAM 950
            |.:::| :|:..|.:..|.:
Mouse  1675 KSISVSLRELCENEEDNVVL 1694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tstNP_001262884.1 Dob10 193..1194 CDD:226947 205/995 (21%)
DEAD 267..414 CDD:278688 44/162 (27%)
HELICc 578..658 CDD:197757 35/80 (44%)
rRNA_proc-arch 715..996 CDD:289976 59/348 (17%)
DSHCT 1025..1188 CDD:285374
Ddx60NP_001280712.1 DEXDc 760..951 CDD:214692 52/192 (27%)
DEAD 766..920 CDD:278688 43/158 (27%)
HELICc 1252..1328 CDD:197757 36/83 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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