DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lsd-1 and plin2

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_021321961.1 Gene:plin2 / 794841 ZFINID:ZDB-GENE-050913-12 Length:444 Species:Danio rerio


Alignment Length:421 Identity:96/421 - (22%)
Similarity:167/421 - (39%) Gaps:84/421 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAE----ATISAAYETIQPAVKLFEPSIQ 75
            :.||..:|||.|:...:..:|...|||:.......|.||    :..|||:....|.:...||.|.
Zfish    29 VARIVHLPLVVSTYDMMSNVYVNTKNNHPYLKSVCEVAENGVKSITSAAFHRSLPIIGKLEPQIS 93

  Fly    76 RLDNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMS---DHLVRPVLKRADSVKQIGNAVLESPL 137
            ..:::.||.||.:|:.:|:::.|.|.:..|.|:.::   :.:...|....|||....|.|:    
Zfish    94 MANDLACKGLDKIEKTLPILHKPSEQIMANAKDAVTGAKEAVSGTVSGAKDSVSFTLNDVM---- 154

  Fly   138 TTYAAERIDGAFTVGDKFVDKYLVP--IQTDQDQTDVKKLVSALNDNFSPIRQQLNRMFGHKSPQ 200
                 :|..|| ..|.....|.:|.  :||..| :.:.||||:..||.....:.|   ..|..| 
Zfish   155 -----DRTRGA-VQGSVEKTKTVVSGGVQTVMD-SRMLKLVSSRVDNALSTSETL---LEHYLP- 208

  Fly   201 EDDNEAVPDERG----------AIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAIHVLFY 255
            |::.|...:||.          |...:..|. .|.|::.|..||.:.:.|...::.:|:|..|.:
Zfish   209 ENEEEKEGEERNTEGLENDSDLANYYVRLGS-LSIKVRDRTYQRAVEKVRHAVQRGQESISQLNH 272

  Fly   256 AAELIATDPKQ---AVQKAKEL------WVYLSADEPENQARPATLEQLIVLLTRESARRVVHLV 311
            ..::|....|.   :.||.:|.      |..:|..:.......:..||:      ||.       
Zfish   273 TMDIIEFTRKNIDGSNQKLQEKLGSLMGWKSVSQSQETESETDSEAEQI------ESR------- 324

  Fly   312 NFSAHVAANIPRNLAHTTTEVAHHIIYINHRIITISRLDKVKTISKEEAESLFKRMLAFYGS--- 373
              :..:|.::.:.|..|.             ::.:|.|..:....:.:..|:.:..|..|.|   
Zfish   325 --TLTIAHSLSQQLQSTC-------------VVLVSSLRGLPQHVQLQVGSVSRSALEIYSSFSK 374

  Fly   374 ---LQGLTNAYLERVASFLSGRMEAEKVTGS 401
               |..|::..|.      |.|.:..::|.|
Zfish   375 AAVLGDLSSTVLS------SSRSQLSRITES 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 77/307 (25%)
plin2XP_021321961.1 Perilipin 22..410 CDD:308593 96/421 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2CMU0
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm26384
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4632
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.950

Return to query results.
Submit another query.