DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and plin1

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_031754076.1 Gene:plin1 / 594876 XenbaseID:XB-GENE-949442 Length:447 Species:Xenopus tropicalis


Alignment Length:369 Identity:76/369 - (20%)
Similarity:142/369 - (38%) Gaps:73/369 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SGSGLHLEAIDRIGSIPLVESSVKRVETIYDKVKNNNRLF----SWYFETAEATISAAYETIQPA 66
            :|||.. ..|:|...:.:|..::..::..|..:|..:.|.    .:|.:..:...:.|..:|||.
 Frog    36 NGSGKD-NVIERFLHLGVVSCTIDSLQNKYVNMKQAHPLVGSVCGFYEKGVQTAGTLAVRSIQPV 99

  Fly    67 VKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMSDHLVR-------PVLKRADS 124
            ||.||..|...:.:.||.:|.||.::|.::.||:.:.:..||.:|..:..       |:...:|.
 Frog   100 VKTFEHQISAANEIACKGMDHLESKVPALHFPPDKIAFELKESISATIQHARSGFGSPITNTSDK 164

  Fly   125 VKQIGNA---------------VLESPLTTYAAERIDGAFTVGDKFVDKYLVPIQTDQDQTDVKK 174
            |..:.:|               .....|:..|.:.:.......:|.|| |::|.|.:.::.|...
 Frog   165 VLGVASAGFGITVNAMNGAKDYAFSKRLSQMATDTVYVVLYNMEKIVD-YMLPQQEECEKPDGMT 228

  Fly   175 LVSALNDNFSP------IRQQLNRMFGH------KSPQEDDNEAVPDERGAIKAIHHGQRFSRKL 227
            :.|..:.:..|      |....:|:|.|      |:.::..|:......|::......|.....:
 Frog   229 VQSYESLSLPPSGLLPRIGALASRVFQHTTQWTYKTIEDARNKGQNWLPGSVALSKEPQSLLVSV 293

  Fly   228 KRRLTQRTIAEARALKKQSKEA--------IHV----LFYAAELIAT---------DPKQAVQKA 271
            .|.|....::...::||.....        ::|    |.:|.:.:||         |.....||.
 Frog   294 TRNLQSVYLSAVSSVKKTPSAVWETARGLLLNVPWQGLSFAKDTLATIGGTLLQFKDKVLPNQKV 358

  Fly   272 KELWVYLSADEPENQARPATLEQLIVLLTRESARRVVHLVNFSA 315
            ||........|.:.|..|           |:|.|: ...|:|:|
 Frog   359 KEKTRKKKTTEKKEQEAP-----------RDSVRQ-EKSVSFTA 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 67/339 (20%)
plin1XP_031754076.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10295
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 61 1.000 Inparanoid score I5215
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9506
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.060

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