DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and zgc:77486

DIOPT Version :10

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_998037.1 Gene:zgc:77486 / 405808 ZFINID:ZDB-GENE-040426-2056 Length:238 Species:Danio rerio


Alignment Length:166 Identity:34/166 - (20%)
Similarity:61/166 - (36%) Gaps:34/166 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 PIQTDQDQTDVKKLVSALNDNFSPIRQQLNRM----------FGHKSPQEDDNEAVPDERG---- 212
            |:.|.:..|..::..|:.:.  ||:.||:..|          ......:|::.|......|    
Zfish    73 PLPTTEAGTPTEERTSSSSP--SPVTQQMTAMSISQDTATTDSDRAEVEEEEEEGSSKSTGPVGE 135

  Fly   213 AIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAIHVLFYA--AELIATDPKQAVQKAKELW 275
            |.:|...|.:...|.|::....|..:...|..:|:....|.|..  |.:::.:..|.|:|     
Zfish   136 AAQASSDGDQTPDKNKKKNRCFTCRKKVGLTGKSQGKSFVFFNKGWAFILSMNRLQDVKK----- 195

  Fly   276 VYLSADEPENQARPATLEQLIVLLTRESARRVVHLV 311
                       :|.|..|....:|.|||...:..|:
Zfish   196 -----------SRFAAKEVNFNVLLRESTNILCSLI 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>285 CDD:460784 26/138 (19%)
zgc:77486NP_998037.1 zf-A20 12..35 CDD:460313
Blue background indicates that the domain is not in the aligned region.

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