DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and plin2

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_012813567.1 Gene:plin2 / 394560 XenbaseID:XB-GENE-953135 Length:425 Species:Xenopus tropicalis


Alignment Length:385 Identity:88/385 - (22%)
Similarity:151/385 - (39%) Gaps:83/385 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEATI----SAAYETIQPAVKLFEPSIQRL 77
            |:.|:|||.|:...|.:.|...|.|:.......:.||.::    |.|..:..|.:...||.|...
 Frog    14 RVISLPLVSSTYDMVSSAYTATKENHPYIKSVCDLAEKSVKSITSVALTSAMPIIHRLEPQIAVA 78

  Fly    78 DNVMCKSLDILEQRIPLVYLPPEMMYWN-------TKEYMSDHLVRPVLKRA----DSVKQIG-- 129
            :|:.|..||.:|:::|::|.|.:.:..|       .||.:...:...|.|..    |||:...  
 Frog    79 NNIACMGLDKIEEKLPILYQPSDKIVSNASDAVAGAKETVLQSITGVVDKTKGAVHDSVEMTKAV 143

  Fly   130 -----NAVLESPLTTYAAERIDGAFTVGDKFVDKYLVPIQTDQDQTDVKKLVSALNDNFSPIRQQ 189
                 |.||.|.:.......::.|.|..:..:::||.|  ||::..    :.:...:.|      
 Frog   144 VNGSINTVLGSSVVQMMNTGVNTALTKSENLLEQYLPP--TDEELA----IEATKTEGF------ 196

  Fly   190 LNRMFGHKSPQEDDNEAVPDERGAIKA--IHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAIHV 252
                                |.|.:.:  |..|. .|.|.::|..|:.:......|.:|:|||..
 Frog   197 --------------------ESGKLPSYYIRLGS-LSTKARKRAYQQALTRIGDAKNRSQEAISQ 240

  Fly   253 LFYAAELIATDPK---QAVQKAKELWVYL------SADEPENQARPATLEQLIVLLTRESARRVV 308
            |....:||....|   .|.||....||..      :|:|....|.  .:|..|:.:||...:::.
 Frog   241 LHKTVDLIEFAKKNVNNANQKLLNTWVEWTKGAGHAANEGSESAE--QIESRILSMTRNLTQQLQ 303

  Fly   309 HLVNFSAHVAANIPRNL---AHTTTEVAHHIIY----------INHRIITISR--LDKVK 353
            ......|.....:|:|:   ||..:.:|..:.:          ::..|:|.||  |.|:|
 Frog   304 TTCLSLAMSVQGLPQNIQDKAHRVSAMAGEMYHNFRSASSLKEVSDNILTNSRGQLQKMK 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 72/310 (23%)
plin2XP_012813567.1 Perilipin 5..390 CDD:397257 88/385 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10295
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 61 1.000 Inparanoid score I5215
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9506
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.070

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