DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and plin3

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_001373243.1 Gene:plin3 / 335278 ZFINID:ZDB-GENE-030131-7218 Length:416 Species:Danio rerio


Alignment Length:319 Identity:64/319 - (20%)
Similarity:123/319 - (38%) Gaps:74/319 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEA---TISAAYET-IQPAVKLFEPSIQ 75
            |.|:|::|||.|:...|...|...|::..|.....|.||:   |:.||..| .:|.:...||.|.
Zfish    22 ISRVGNLPLVSSACGAVYNAYSSTKDSVPLLKGVMEVAESGVRTLGAAASTGSKPILDRLEPQIA 86

  Fly    76 RLDNVMCKSLDILEQRIPLVYLPPEMMYWNT--KEYMS-----DHLVRPVLKRADSVKQIG---- 129
            .::....|.|:.:|..:|::..|.:.:..:|  ..|.|     |.:|..|::..:..:...    
Zfish    87 AVNEYAIKGLEKVEGNLPILQQPADKLVSDTVGMVYQSVTGAKDAVVGAVMEGVEKTRMAVTGGI 151

  Fly   130 NAVLESPLTTYAAERIDGAFTVGDKFVDKYLVPIQTDQDQTDVKKLVSALNDNFSPIRQQLNRMF 194
            |.|:.|.:....:..:|.|.|..:.:|::.|                        ||.::.....
Zfish   152 NTVMGSRVGQMVSNGVDKALTHSEDWVEQNL------------------------PISEKELATL 192

  Fly   195 GHKSPQEDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAIH-------- 251
            ....|.|::...|.........:   .:.|.|::.|..::::..||    ::::..|        
Zfish   193 AEPRPGEEEGFIVSTRSSYFVRL---GKLSAKVRERALEQSLLRAR----KARDTTHASVTQMTS 250

  Fly   252 ----------VLFYAAELIATDPKQAVQKAKELWVYLSADEPENQARPATLEQLIVLLT 300
                      .|..|.:.:|..|:|.:|:.|| |         .:.:|..|::.:...|
Zfish   251 TMDLLESARVTLTSANQQLAGAPEQLLQRWKE-W---------KEGQPKELQEKVTAET 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 63/312 (20%)
plin3NP_001373243.1 Perilipin 14..411 CDD:397257 64/319 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4632
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.040

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