DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and Plin3

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_236783.4 Gene:Plin3 / 316130 RGDID:1595854 Length:438 Species:Rattus norvegicus


Alignment Length:334 Identity:61/334 - (18%)
Similarity:134/334 - (40%) Gaps:59/334 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEATI----SAAYETIQPAVKLFEPSIQ 75
            :.|:.::||:.|:...|...|...|.:........:.||..:    :||....||.:...||.|.
  Rat    27 VGRVANLPLISSTCGMVSAAYTSTKESYPHVRTVCDVAEKGVKTLTTAAVSRAQPILSKLEPQIV 91

  Fly    76 RLDNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMSDHLVRPVLKRADSVKQIGNAVLESPLTTY 140
            ..:....:.||.|::.:|::..|.|.:..:|||.:|..:       :.:.:.:.::|  |.....
  Rat    92 TANKYAHQGLDRLQESLPILQQPTEKVLADTKELVSSTV-------SGAREMVSSSV--SGAKDT 147

  Fly   141 AAERIDGAFTVGDKFVDKYLVPIQTDQDQTD--------------VKKLV-----------SALN 180
            .|.|:.||       ||.....:::..|.|.              |.::|           .|..
  Rat   148 VATRVTGA-------VDVTCGAVKSSVDMTKSAMTSGVQSIMGSRVGQMVISGVDRVLVKSEAWA 205

  Fly   181 DNFSPIRQQLNRMFGHKSPQEDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQ 245
            ||..|:......:.. .||:..|..::..:|............|.:|:.:..:.::.:...:::.
  Rat   206 DNRLPLTDTELALIA-TSPEGADMASLQQQRQERSYFVRLGSLSERLRNQAYEHSLGKLCNVRQS 269

  Fly   246 SKEAIHVLFYAAELIATDPKQAV--------QKAKELWVYLSADEPE----NQARPATLEQLIVL 298
            :::|:..|.:...|:.: .||.|        :|..::|:..:...|:    :.::|..:|...:.
  Rat   270 AQDALQQLAHVLSLMES-VKQGVDQRLEEGQEKLHQMWLTWNQKTPQDAEKDPSKPEQVEAQALS 333

  Fly   299 LTRESARRV 307
            :.|:.|:::
  Rat   334 VFRDIAQQL 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 59/320 (18%)
Plin3XP_236783.4 Perilipin 23..430 CDD:397257 61/334 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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