DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and Plin2

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_001007145.1 Gene:Plin2 / 298199 RGDID:728889 Length:422 Species:Rattus norvegicus


Alignment Length:443 Identity:82/443 - (18%)
Similarity:154/443 - (34%) Gaps:136/443 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEATI----SAAYETIQPAVKLFEPSIQ 75
            :.|:.::|||.|:...|.:.|...|:.:.......|.||..:    |.|.....|.::..||.|.
  Rat    13 VTRVANLPLVSSTYDLVSSAYVSTKDQHPYLRSVCEMAEKGVRTVTSVAVTGALPIIQKLEPQIA 77

  Fly    76 RLDNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMS---DHLVRPVLKRADSVKQIGNAVLESP- 136
            ..:...||.||.:|.|:|::..|...:..|.:..::   |.:...:....|||....:.|::.. 
  Rat    78 VANTYACKGLDRMEARLPILNQPTSEIVANARGAVTGAKDVVTTTMAGAKDSVASTVSGVVDKTK 142

  Fly   137 -LTTYAAER----------------------IDGAFTVGDKFVDKYLVPIQTDQDQTDVKKLVSA 178
             ..|.:.||                      ::.|.:..:..||:|| |:...:.:.:.||:   
  Rat   143 GAVTGSVERTKSVVNGGIDTVLGMVQLMSSGVENAISKSELLVDQYL-PLTQKELEMEAKKV--- 203

  Fly   179 LNDNFSPIRQQLNRMFGHKSPQEDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALK 243
              :.|..:::|                         :.....:..|.|:..|...:.:...:..|
  Rat   204 --EGFDMVQKQ-------------------------RYYERLESLSTKICTRAYHQALGRIKDAK 241

  Fly   244 KQSKEAI-------HVLFYAAELIATDPKQAVQKAKELWV-------YLSADEPENQARPATLEQ 294
            ::.:|.|       |::.:|.:.:.:..::...|....||       |...||            
  Rat   242 QKGQETISQLHSTVHLIEFARKNVHSANQKIQDKLSVSWVEWKRIVGYDDTDE------------ 294

  Fly   295 LIVLLTRESARRVVHLVNFSAHVAANIPRNLAHTTTEV---------------AHHI------IY 338
                     :....|:.:.:..:|.|:.:.| |||.:.               |.|:      ||
  Rat   295 ---------SHCAEHIESHTLSMARNLTQQL-HTTCQTLLFNVQGLPQNIQDQAKHLGVMAGDIY 349

  Fly   339 INHRIITISR--LDKVKTISKEEAESLFKRMLAFYGSLQGLTNAYLERVASFL 389
            ...|.:|..:  .|.|.|.||              |.||.:..: |:.|..:|
  Rat   350 SAFRNVTSFKEVSDGVLTSSK--------------GQLQKMKES-LDEVMDYL 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 58/324 (18%)
Plin2NP_001007145.1 Perilipin 5..404 CDD:397257 82/443 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2CMU0
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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