DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and Plin2

DIOPT Version :10

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_038965446.2 Gene:Plin2 / 298199 RGDID:728889 Length:455 Species:Rattus norvegicus


Alignment Length:460 Identity:86/460 - (18%)
Similarity:159/460 - (34%) Gaps:143/460 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TSGSGLHLEAID-------RIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEATI----SA 58
            |.|..:...|:|       |:.::|||.|:...|.:.|...|:.:.......|.||..:    |.
  Rat    29 TPGGKMASVAVDPQPSVVTRVANLPLVSSTYDLVSSAYVSTKDQHPYLRSVCEMAEKGVRTVTSV 93

  Fly    59 AYETIQPAVKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMS---DHLVRPVLK 120
            |.....|.::..||.|...:...||.||.:|.|:|::..|...:..|.:..::   |.:...:..
  Rat    94 AVTGALPIIQKLEPQIAVANTYACKGLDRMEARLPILNQPTSEIVANARGAVTGAKDVVTTTMAG 158

  Fly   121 RADSVKQIGNAVLESP--LTTYAAER----------------------IDGAFTVGDKFVDKYLV 161
            ..|||....:.|::..  ..|.:.||                      ::.|.:..:..||:|| 
  Rat   159 AKDSVASTVSGVVDKTKGAVTGSVERTKSVVNGGIDTVLGMVQLMSSGVENAISKSELLVDQYL- 222

  Fly   162 PIQTDQDQTDVKKLVSALNDNFSPIRQQLNRMFGHKSPQEDDNEAVPDERGAIKAIHHGQRFSRK 226
            |:...:.:.:.||:     :.|..:::|                         :.....:..|.|
  Rat   223 PLTQKELEMEAKKV-----EGFDMVQKQ-------------------------RYYERLESLSTK 257

  Fly   227 LKRRLTQRTIAEARALKKQSKEAI-------HVLFYAAELIATDPKQAVQKAKELWV-------Y 277
            :..|...:.:...:..|::.:|.|       |::.:|.:.:.:..::...|....||       |
  Rat   258 ICTRAYHQALGRIKDAKQKGQETISQLHSTVHLIEFARKNVHSANQKIQDKLSVSWVEWKRIVGY 322

  Fly   278 LSADEPENQARPATLEQLIVLLTRESARRVVHLVNFSAHVAANIPRNLAHTTTEV---------- 332
            ...||                     :....|:.:.:..:|.|:.:.| |||.:.          
  Rat   323 DDTDE---------------------SHCAEHIESHTLSMARNLTQQL-HTTCQTLLFNVQGLPQ 365

  Fly   333 -----AHHI------IYINHRIITISR--LDKVKTISKEEAESLFKRMLAFYGSLQGLTNAYLER 384
                 |.|:      ||...|.:|..:  .|.|.|.||              |.||.:..: |:.
  Rat   366 NIQDQAKHLGVMAGDIYSAFRNVTSFKEVSDGVLTSSK--------------GQLQKMKES-LDE 415

  Fly   385 VASFL 389
            |..:|
  Rat   416 VMDYL 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>285 CDD:460784 60/322 (19%)
Plin2XP_038965446.2 None

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