DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and Plin2

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_031434.3 Gene:Plin2 / 11520 MGIID:87920 Length:425 Species:Mus musculus


Alignment Length:407 Identity:81/407 - (19%)
Similarity:153/407 - (37%) Gaps:102/407 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEATI----SAAYETIQPAVKLFEPSIQRL 77
            |:.::|||.|:...|.:.|...|:.........|.||..:    |||..:..|.::..||.|...
Mouse    15 RVANLPLVSSTYDLVSSAYVSTKDQYPYLRSVCEMAEKGVKTVTSAAMTSALPIIQKLEPQIAVA 79

  Fly    78 DNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMS---DHLVRPVLKRADSVKQIGNAVLESP--L 137
            :...||.||.:|:|:|::..|...:..:.:..::   |.:...:....|||....:.|::..  .
Mouse    80 NTYACKGLDRMEERLPILNQPTSEIVASARGAVTGAKDVVTTTMAGAKDSVASTVSGVVDKTKGA 144

  Fly   138 TTYAAER----------------------IDGAFTVGDKFVDKYLVPIQTDQDQTDVKKLVSALN 180
            .|.:.||                      :|.|.|..:..||:|. |:..::.:.:.||:     
Mouse   145 VTGSVERTKSVVNGSINTVLGMVQFMNSGVDNAITKSELLVDQYF-PLTQEELEMEAKKV----- 203

  Fly   181 DNFSPIRQQLN--RMFGHKSPQEDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALK 243
            :.|..:::..|  |:                           :..|.||..|...:.::..:..|
Mouse   204 EGFDMVQKPSNYERL---------------------------ESLSTKLCSRAYHQALSRVKEAK 241

  Fly   244 KQSKEAIHVLFYAAELIATDPK------QAVQKAKE----LWV----YLSADEPENQARPATLEQ 294
            ::|:|.|..|.....||....|      |.:|.|::    .||    .:..|:.:.......:|.
Mouse   242 QKSQETISQLHSTVHLIEFARKNMHSANQKIQGAQDKLYVSWVEWKRSIGYDDTDESHCVEHIES 306

  Fly   295 LIVLLTRESARRV-----VHLVNFSAHVAANIPRNLAHTTTEVAHHIIYINHRIITISR------ 348
            ..:.:.|...:::     ..|||     |..:|:|:    .:.|.|:..:...|.::.|      
Mouse   307 RTLAIARNLTQQLQTTCQTVLVN-----AQGLPQNI----QDQAKHLGVMAGDIYSVFRNAASFK 362

  Fly   349 --LDKVKTISKEEAESL 363
              .|.|.|.||.:.:.:
Mouse   363 EVSDGVLTSSKGQLQKM 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 65/324 (20%)
Plin2NP_031434.3 Perilipin 6..392 CDD:367309 81/407 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2CMU0
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4632
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.940

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