DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and Plin1

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:NP_001106942.1 Gene:Plin1 / 103968 MGIID:1890505 Length:517 Species:Mus musculus


Alignment Length:431 Identity:87/431 - (20%)
Similarity:150/431 - (34%) Gaps:103/431 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAEATISAAYET-IQPAVKL----FEPSI 74
            :.|:..:|:|..:.:..:..|:..|..:.|.        |::..|||. :|.|..|    .||.:
Mouse    21 LQRVLQLPVVSGTCECFQKTYNSTKEAHPLV--------ASVCNAYEKGVQGASNLAAWSMEPVV 77

  Fly    75 QRL-------DNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMSDHLVR-------PVLKRADSV 125
            :||       :.:.|:.||.||::||.:..|||.:....|..:|..|..       |:...:|.|
Mouse    78 RRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKGTISTRLRSARNSISVPIASTSDKV 142

  Fly   126 KQIGNAVLESPL------TTYAAERIDGAFTVGDKFVDKYLVPIQTDQDQTDVKKLVSALNDNFS 184
            .....|..|..|      ..|||....|....|.           .|.....::|:|..|.....
Mouse   143 LGATLAGCELALGMAKETAEYAANTRVGRLASGG-----------ADLALGSIEKVVEFLLPPDK 196

  Fly   185 PIRQQLNRMFGHKSPQEDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEA 249
            .......|....|:|     :|.|      ..:......:..|.|...|.|   |.|||:....|
Mouse   197 ESAPSSGRQRTQKAP-----KAKP------SLVRRVSTLANTLSRHTMQTT---AWALKQGHSLA 247

  Fly   250 IHV-----LFYAAELIATDPKQAVQK----AKELWVY-LSA---------------------DEP 283
            :.:     |...|:..|:...|.|.:    .:..|:: |:|                     :|.
Mouse   248 MWIPGVAPLSSLAQWGASAAMQVVSRRQSEVRVPWLHNLAASQDESHDDQTDTEGEETDDEEEEE 312

  Fly   284 ENQARPATLEQLIVLLTRESARRVVHLVNFSAHVAANIPRNLAHTTTEVAHHIIYINHRIITISR 348
            |::|....|.::..|.....      |:....|...|..||.....|.....::....||:   .
Mouse   313 ESEAEENVLREVTALPNPRG------LLGGVVHTVQNTLRNTISAVTWAPAAVLGTVGRIL---H 368

  Fly   349 LDKVKTISKEEAESLFKRMLAFYGSLQGLTNAYLERVASFL 389
            |...:.:|..:.     |.::...:|:|:|:..::.|..::
Mouse   369 LTPAQAVSSTKG-----RAMSLSDALKGVTDNVVDTVVHYV 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 71/335 (21%)
Plin1NP_001106942.1 Perilipin 14..391 CDD:367309 84/416 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..216 5/31 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..320 5/33 (15%)
Required for interaction with CIDEC. /evidence=ECO:0000269|PubMed:23481402 290..321 3/30 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..490
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44307
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4632
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.910

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