DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lsd-1 and plin3

DIOPT Version :9

Sequence 1:NP_732904.2 Gene:Lsd-1 / 42810 FlyBaseID:FBgn0039114 Length:431 Species:Drosophila melanogaster
Sequence 2:XP_002934059.2 Gene:plin3 / 100487248 XenbaseID:XB-GENE-962693 Length:419 Species:Xenopus tropicalis


Alignment Length:435 Identity:85/435 - (19%)
Similarity:175/435 - (40%) Gaps:87/435 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AIDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFETAE----ATISAAYETIQPAVKLFEPSI 74
            |:.|:.|:|||.|:...|..:|...|.::.......:.||    ....||....||.:...||.|
 Frog    19 AVSRVTSLPLVSSACSVVGAVYSSTKESHPYIRSVCDVAEKGAKTLTEAAMSGAQPLLTRLEPQI 83

  Fly    75 QRLDNVMCKSLDILEQRIPLVYLPPEMMYWNTKEYMSDHL----------VRPVLKRA------- 122
            ...:.::||.||.||..:|::..|.|.:..:||:.:::.:          |..|:..|       
 Frog    84 ASANELVCKGLDKLESTLPILQQPTEKVVSDTKDLVTNTVTGARDTVTGAVSGVMGLAYGAMQGS 148

  Fly   123 -DSVKQIGNAVLESPLTTYAAERIDGAFTVGDKFVDKYLVPIQTDQDQTDVKKLVSALNDNFSPI 186
             |..:...::|:.:.:.......:|......::.||.|| |: ||::...:...|...  ..:|:
 Frog   149 VDMTRVAVSSVMGTRVGQLVTNSVDTVLGKSEELVDHYL-PM-TDEELAQLASSVEGF--EVAPL 209

  Fly   187 RQQLNRMFGHKSPQEDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAIH 251
            ::|..:            ::.....|::         |.:|:.|..|.::.:.|:.:..::|.:.
 Frog   210 QEQRKQ------------QSYFVRLGSL---------STRLRHRAYQHSLGKVRSARNNTQELLT 253

  Fly   252 VLFYAAELIATDPKQAVQ----KAKELWVYLSADEP-------ENQARPATLE----QLIVLLTR 301
            .|....:|: ...|::||    |..:||:..:..:|       |.:::...||    .::..||.
 Frog   254 QLHQTIDLM-DSVKRSVQGGQEKLHQLWLEWNNKQPNARLNDGEERSQFELLEYRTFTMVQSLTA 317

  Fly   302 ESARRVVHLVNFSAHVAANIPRNL---------AHTTTEVAHHIIYINHRIITISRLDKVKTISK 357
            :.....:.||..:..:.::|...:         .|::.........::..|:|.||....|.  :
 Frog   318 QLQTTCLSLVTGAQGLPSHIEERMQQLRQNAQDLHSSFSNIFSFGDLSAGILTQSREQVTKV--R 380

  Fly   358 EEAESLFKRMLAFYGSLQGLTNAYLERVASFLSGRMEAEKVTGSD 402
            :..:.||..:         :|||.|    ::|.|....:.|..::
 Frog   381 DHVDELFSYV---------VTNAPL----TWLVGPFAPQLVESAE 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsd-1NP_732904.2 Perilipin 14..>295 CDD:281086 65/317 (21%)
plin3XP_002934059.2 Perilipin 13..391 CDD:367309 78/408 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437332at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9506
Panther 1 1.100 - - O PTHR14024
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4632
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.050

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