DRSC/TRiP Functional Genomics Resources

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Protein Alignment PTPMT1 and ssh2b

DIOPT Version :10

Sequence 1:NP_651180.3 Gene:PTPMT1 / 42807 FlyBaseID:FBgn0039111 Length:200 Species:Drosophila melanogaster
Sequence 2:XP_009293925.1 Gene:ssh2b / 557912 ZFINID:ZDB-GENE-081205-4 Length:1179 Species:Danio rerio


Alignment Length:193 Identity:42/193 - (21%)
Similarity:70/193 - (36%) Gaps:86/193 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFE 98
            :|.|||.||     |:.|                       ::|.|:.:..|::::...|.:|  
Zfish   328 KIFEHVYLG-----SEWN-----------------------ASNLEELQNTGVQYILNVTREI-- 362

  Fly    99 SPNQEKLFRGV-EFIN-------------------KFLPLKQRIGGLSSSYQPENVGSVYVHCKA 143
                :..|.|: |:.|                   ||:...::.|           ....||||.
Zfish   363 ----DNFFPGLFEYHNIRVYDEEATDLLAYWNDTYKFISRAKKAG-----------AKCLVHCKM 412

  Fly   144 GRTRSATLVGCYLMMKNGWTPDQAVDHMRKCR----PH------------ILL-----HTKQW 185
            |.:|||:.|..|.|.:.||..:||.:::::.|    |:            ||:     |.|.|
Zfish   413 GVSRSASTVIAYAMKEYGWDMEQAFEYVKERRAVTKPNPSFMRQLVEYQGILIASKQRHNKLW 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTPMT1NP_651180.3 PTPMT1 31..194 CDD:350374 42/193 (22%)
ssh2bXP_009293925.1 SSH-N 38..254 CDD:212166
DEK_C 262..320 CDD:462592
DSP_slingshot_2 323..466 CDD:350417 39/182 (21%)
Blue background indicates that the domain is not in the aligned region.

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