DRSC/TRiP Functional Genomics Resources

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Protein Alignment PTPMT1 and ssh

DIOPT Version :10

Sequence 1:NP_651180.3 Gene:PTPMT1 / 42807 FlyBaseID:FBgn0039111 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_733063.1 Gene:ssh / 42986 FlyBaseID:FBgn0029157 Length:1193 Species:Drosophila melanogaster


Alignment Length:176 Identity:46/176 - (26%)
Similarity:69/176 - (39%) Gaps:51/176 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIEFLQLATTDIFE 98
            :|.|||.||     |:.|                       ::|.|:.:|.|:..:...|.:|  
  Fly   387 KIFEHVYLG-----SEWN-----------------------ASNLEELQKNGVRHILNVTREI-- 421

  Fly    99 SPNQEKLFRGV-EFIN-------KFLPLKQRIGGLSSSYQPENVGS-VYVHCKAGRTRSATLVGC 154
                :..|.|. |:.|       |...||..........:.:..|| |.||||.|.:|||::|..
  Fly   422 ----DNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIA 482

  Fly   155 YLMMKNGWTPDQAVDHMRKCRPHILLHTKQWDALRLFYTNNVETKS 200
            |.|....|...||::|::|.|..|..:..        :.|.:||.|
  Fly   483 YAMKAYQWEFQQALEHVKKRRSCIKPNKN--------FLNQLETYS 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTPMT1NP_651180.3 PTPMT1 31..194 CDD:350374 42/168 (25%)
sshNP_733063.1 SSH-N 21..313 CDD:212166
DEK_C 326..379 CDD:462592
DSP_slingshot 385..523 CDD:350363 46/176 (26%)
Blue background indicates that the domain is not in the aligned region.

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