DRSC/TRiP Functional Genomics Resources

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Protein Alignment PTPMT1 and ssh2a

DIOPT Version :10

Sequence 1:NP_651180.3 Gene:PTPMT1 / 42807 FlyBaseID:FBgn0039111 Length:200 Species:Drosophila melanogaster
Sequence 2:XP_005157728.1 Gene:ssh2a / 325085 ZFINID:ZDB-GENE-030131-3810 Length:1175 Species:Danio rerio


Alignment Length:217 Identity:48/217 - (22%)
Similarity:87/217 - (40%) Gaps:62/217 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TLLYNVLMEK----ASARNWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAF-- 74
            |.|..::|:|    .:::.....::..::.....|:    :.|:.|.:..:..|:...|:...  
Zfish   265 TRLREIMMQKDLENVTSKEIRTELEMQMVCNLREFK----EFIDNEMIVILGQMDSPTEIFDHVY 325

  Fly    75 ------SNNTEKWRKLGIEFLQLATTDI-------FESPN----QEKLFRGVEFIN---KFLPLK 119
                  ::|.|:.:..|:.::...|.:|       ||..|    .|:....:|:.|   ||:...
Zfish   326 LGSEWNASNLEELQNSGVRYILNVTREIDNFFPGLFEYHNIRVYDEEATNLLEYWNDTYKFISKA 390

  Fly   120 QRIGGLSSSYQPENVGSVYVHCKAGRTRSATLVGCYLMMKNGWTPDQAVDHMRKCR----PH--- 177
            ::.|           ....||||.|.:|||:.|..|.|.:.||..|:|.||:::.|    |:   
Zfish   391 KKAG-----------VKCLVHCKMGVSRSASTVIAYAMKEYGWDLDRAFDHVKERRSVTKPNPSF 444

  Fly   178 ---------ILL-----HTKQW 185
                     |||     |.|.|
Zfish   445 MKQLEEYQGILLASKQRHNKLW 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTPMT1NP_651180.3 PTPMT1 31..194 CDD:350374 44/198 (22%)
ssh2aXP_005157728.1 SSH-N 12..245 CDD:212166
DEK_C 259..311 CDD:462592 7/49 (14%)
DSP_slingshot 317..455 CDD:350363 34/148 (23%)
Blue background indicates that the domain is not in the aligned region.

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