DRSC/TRiP Functional Genomics Resources

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Protein Alignment PTPMT1 and ssh1

DIOPT Version :10

Sequence 1:NP_651180.3 Gene:PTPMT1 / 42807 FlyBaseID:FBgn0039111 Length:200 Species:Drosophila melanogaster
Sequence 2:XP_002932127.2 Gene:ssh1 / 100495893 XenbaseID:XB-GENE-6041963 Length:975 Species:Xenopus tropicalis


Alignment Length:153 Identity:40/153 - (26%)
Similarity:61/153 - (39%) Gaps:31/153 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 MEKASARNWYDRIDEHVILGALPFRSQANDLIEKENMKAVVSMNEDYELTAFSNNTEKWRKLGIE 87
            |:|||.      |.:||.||:   ...|::|.|..:......:|...|:..|......:.  .|.
 Frog   304 MDKASL------IFDHVYLGS---EWNASNLEELHSTGVGYILNVTREIDNFFPGMFAYH--NIR 357

  Fly    88 FLQLATTDIFESPNQEKLFRGVEFINKFLPLKQRIGGLSSSYQPENVGSVYVHCKAGRTRSATLV 152
            .....|||:....|.     ...||.|               ..:|.....||||.|.:|||:.|
 Frog   358 VYDEETTDLLSHWND-----AYHFITK---------------AKKNKSKCLVHCKMGVSRSASTV 402

  Fly   153 GCYLMMKNGWTPDQAVDHMRKCR 175
            ..|.|.:|||:.::|.:.:::.|
 Frog   403 IAYAMKENGWSMEKAYNFVKQKR 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTPMT1NP_651180.3 PTPMT1 31..194 CDD:350374 36/145 (25%)
ssh1XP_002932127.2 SSH-N 3..235 CDD:212166
DEK_C 249..301 CDD:462592
DSP_slingshot_1 304..447 CDD:350418 40/153 (26%)
Blue background indicates that the domain is not in the aligned region.

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