DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt5 and AFG3

DIOPT Version :10

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_010933.1 Gene:AFG3 / 856737 SGDID:S000000819 Length:761 Species:Saccharomyces cerevisiae


Alignment Length:405 Identity:129/405 - (31%)
Similarity:202/405 - (49%) Gaps:64/405 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 EKIKVNKTLPYLVSNVI---ELLD-----------VDPQEEEDDGSVTVLDNQRKGKCAV--IKT 115
            ||..|:|.  |:|:..:   ||::           ||..||:.|....:|:...:.:..:  |:.
Yeast   159 EKGLVSKI--YVVNKFLVEAELVNTKQVVSFTIGSVDIFEEQMDQIQDLLNIPPRDRIPIKYIER 221

  Fly   116 STRQAY---FLPVIGLVD-----AEKLKP-------------GDLVGVNKDSYLILETLPAEYDA 159
            |:...:   |||.|.|:.     ..|:..             |.:..|.|              :
Yeast   222 SSPFTFLFPFLPTIILLGGLYFITRKINSSPPNANGGGGGGLGGMFNVGK--------------S 272

  Fly   160 RVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTL 224
            |.|....:......:.::.|.|:..||::|.|.. :.:..|:..||...|:|.:|.|||||||||
Yeast   273 RAKLFNKETDIKISFKNVAGCDEAKQEIMEFVHF-LKNPGKYTKLGAKIPRGAILSGPPGTGKTL 336

  Fly   225 LARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 289
            ||:|.|.:....||.::|.:.|:||:|.||..|||.|..|:..||:||||||:||||.:|.....
Yeast   337 LAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGA 401

  Fly   290 AG--DREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARA 352
            .|  :.|.:.|:.:||.::|||:::..:.|:|.|||.|:||.||:|.||.||.|:...|:...|.
Yeast   402 LGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQ 466

  Fly   353 RIMQIHSRKMN----VSNDVN--FEELSRSTDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMD 411
            :|..:|.:::|    :::|:|  ..:|:..|..|.||.....|.||.:||.|.:...:|...|..
Yeast   467 QIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQ 531

  Fly   412 AIMEVQA--KKKANL 424
            ||..|.|  :||..:
Yeast   532 AIERVIAGLEKKTRV 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 PRK03992 28..421 CDD:179699 127/400 (32%)
AFG3NP_010933.1 FtsH_ext 124..215 CDD:377663 14/57 (25%)
FtsH_fam 223..730 CDD:273520 113/339 (33%)

Return to query results.
Submit another query.