DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt5 and RPT3

DIOPT Version :9

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_200637.1 Gene:RPT3 / 835941 AraportID:AT5G58290 Length:408 Species:Arabidopsis thaliana


Alignment Length:420 Identity:161/420 - (38%)
Similarity:249/420 - (59%) Gaps:45/420 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VMRMST---DEIVSRTRLMDNEIKIMKSEVIRITHEIQAQNEKIKDN-----------TEKIKVN 72
            :|.:||   :::..|.:.::.:::.           ...|.|.:||.           .|::|..
plant    19 LMDLSTADEEDLYGRLKSLERQLEF-----------TDIQEEYVKDEQKNLKRELLRAQEEVKRI 72

  Fly    73 KTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPG 137
            :::|.::...:|::|                 |..|   ::.::|...|::.::..::.|.|||.
plant    73 QSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPS 117

  Fly   138 DLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFK 202
            ..|.:::.|..:::.||.|.|:.:..:...|:|...|:||||.|.|.||:.|||.||:||.|.:|
plant   118 ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYK 182

  Fly   203 NLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267
            .:||.||:|||||||||||||:||:|.|..|.:.|:::.|.:.||.::|:|.::|||.|.||||.
plant   183 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247

  Fly   268 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALL 332
            |||||||||:|||.|.|||::...||||||.::|||||:|||..|.::|||.||||.|.||||||
plant   248 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 312

  Fly   333 RSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIAL 397
            |.||||||||||.|:...:..:.|:.:.|||:|::|:.|:.....|..:.|:..|:|.||||.|:
plant   313 RPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAV 377

  Fly   398 RRSANSVTHEDFMDAIMEVQAKKKANLNYY 427
            |::...:..:||.........|...:..:|
plant   378 RKNRYVILPKDFEKGYRANVKKPDTDFEFY 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 157/398 (39%)
RPT3NP_200637.1 PTZ00454 15..408 CDD:240423 161/420 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D571919at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.