DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and RCA

DIOPT Version :10

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_565913.1 Gene:RCA / 818558 AraportID:AT2G39730 Length:474 Species:Arabidopsis thaliana


Alignment Length:406 Identity:83/406 - (20%)
Similarity:155/406 - (38%) Gaps:84/406 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 YLVSNVIELLDVDPQEEEDDGSVTVL----DNQRKG---KCAVIKTSTRQAYFLPVIGLVDAEKL 134
            :|...|:.:.......::.:||..||    |.|..|   :.....||..|.......|:||:...
plant    33 FLGKKVVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQ 97

  Fly   135 KPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQ------ELIEAVVL 193
            .|   :|.            ..:.|.:.:.|...:...||:    ||..:.      ..::.:|:
plant    98 AP---MGT------------GTHHAVLSSYEYVSQGLRQYN----LDNMMDGFYIAPAFMDKLVV 143

  Fly   194 PMTHKEKFKNL-GIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLV 257
            .:|  :.|..| .|..|..:.::|..|.||:.......|:.....:.::..:|.....|:.|||:
plant   144 HIT--KNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLI 206

  Fly   258 ----RDAFALAKEKAPAIIFIDELDA-----IGTKRFDSEKAGDREVQRTMLELLN-----QLDG 308
                |:|..|.|:.....:||::|||     .||.::   ...::.|..|::.:.:     ||.|
plant   207 RQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQY---TVNNQMVNATLMNIADNPTNVQLPG 268

  Fly   309 F---SSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ--IHSRKMNVSNDV 368
            .   ...|.:.:|...|....|...|:|.||:::  .:..|..|.|..:.:  ..:.|:...:.|
plant   269 MYNKEENARVPIICTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRTDKIKDEDIV 331

  Fly   369 NF-EELSRSTDDFNGA--------QCKAVCVEAGMIAL-RRSANS-----------VTHEDFMD- 411
            .. ::....:.||.||        :.:......|:..: :|..||           :|:|..|: 
plant   332 TLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEY 396

  Fly   412 ---AIMEVQAKKKANL 424
               .:||.:..|:..|
plant   397 GNMLVMEQENVKRVQL 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 PRK03992 28..421 CDD:179699 81/401 (20%)
RCANP_565913.1 PLN00020 8..422 CDD:215031 83/406 (20%)
MPEG1_P2 450..>470 CDD:439345
Blue background indicates that the domain is not in the aligned region.

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