DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and Rpt3R

DIOPT Version :9

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster


Alignment Length:422 Identity:167/422 - (39%)
Similarity:251/422 - (59%) Gaps:31/422 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIRITHEIQAQNEKIKDN-----------TEKIKV 71
            |.||:.:.....:.....|..:::.::..::......||.|.:.||:.           .|::|.
  Fly     4 LKEEIAQFHEQSLEKYDGLDPHDLYVLYKKLQMELELIQVQEDYIKEEQRNLKKEFIHAQEEVKR 68

  Fly    72 NKTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKP 136
            .|.:|.::...:|.:|      |::|              ::.::|...|::.|:..:|.|:|||
  Fly    69 IKAVPLVIGQFLEAVD------ENNG--------------IVASTTGSNYYVRVLSTIDREQLKP 113

  Fly   137 GDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKF 201
            ...||::|.|..:::.:|.|.|:.:..:..||:|...||||||||.|.||:.|||.||:||.:.:
  Fly   114 SSSVGLHKQSNCLVDLVPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLY 178

  Fly   202 KNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 266
            |.:||.||:||||:||||.|||:||:|.|..|.::|:::.|.:.||.::|:|.::|||.|.|||:
  Fly   179 KQIGIDPPRGVLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQ 243

  Fly   267 KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL 331
            .:|:||||||:|||.|||||::...||||||.:||||||:|||..|.:||||.||||.|.|||||
  Fly   244 NSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPAL 308

  Fly   332 LRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIA 396
            ||.||||||||.|.|:...:..:....:.||||..||:.|::....|..:.|...|:|.||||.|
  Fly   309 LRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHA 373

  Fly   397 LRRSANSVTHEDFMDAIMEVQAKKKANLNYYA 428
            :|.:...|..:||.........|.:|...:|:
  Fly   374 VRENRYVVNAKDFEKGYKTSVRKDEAQHEFYS 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 162/398 (41%)
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 163/404 (40%)
AAA 189..322 CDD:278434 83/132 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445417
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1222
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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