DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt5 and psmc2

DIOPT Version :10

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_957260.1 Gene:psmc2 / 393941 ZFINID:ZDB-GENE-040426-1327 Length:433 Species:Danio rerio


Alignment Length:441 Identity:169/441 - (38%)
Similarity:251/441 - (56%) Gaps:48/441 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LGEEVMRMSTDEIVSR-TRLMD-NEIKIMKS--------EVIRITHEIQAQNEKIKDNT------ 66
            ||.|..::..:|...: .|.:| .:|.::|:        ::.::..:||...:||.:.|      
Zfish     5 LGTEQRKVKEEEKEDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESD 69

  Fly    67 -------------EKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTR 118
                         :|..:....|..|:...::::.|.::.:                .:|.....
Zfish    70 TGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPK----------------YIINVKQF 118

  Fly   119 QAYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQ 183
            ..:.:.:...|....::.|..|||:::.|.|...||.:.|..|..|:|:|:|...|||:||..:|
Zfish   119 AKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQ 183

  Fly   184 IQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 248
            |::|.|.|..|:.|.|:|.||||.|||||||:|||||||||.|||.|.:|.:.|:::.|.:|||.
Zfish   184 IEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 248

  Fly   249 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTA 313
            ::|:||::||:.|.:|:.|...:||.||:||||..|||....||.|||||||||:||||||....
Zfish   249 YVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

  Fly   314 DIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTD 378
            :|||:.||||.|.|||||:|.|||||||||..|:.|.|..|.:||:|.|:|..|:.||.|:|...
Zfish   314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCP 378

  Fly   379 DFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEV---QAKKKANLNY 426
            :..||:.::||.||||.|:|......|.:||::|:.:|   .||..|...|
Zfish   379 NSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 PRK03992 28..421 CDD:179699 164/424 (39%)
psmc2NP_957260.1 PRK03992 44..430 CDD:179699 161/402 (40%)

Return to query results.
Submit another query.