DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rpt5 and psmc6

DIOPT Version :9

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001003832.1 Gene:psmc6 / 321585 ZFINID:ZDB-GENE-030131-304 Length:389 Species:Danio rerio


Alignment Length:385 Identity:163/385 - (42%)
Similarity:238/385 - (61%) Gaps:15/385 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 AQNEK--IKDNTEKIKVNKTLPYLVSNVIE-LLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTR 118
            |:|.:  ::|..:|:..:|.:...:..:.| |.::..|.|:.:..:..|.:..:....|:|..|.
Zfish     2 AENREKGLQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTE 66

  Fly   119 QAYFLP-------VIGL---VDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQ 173
            :.:.:.       |:|.   :|..|||||..|.::..:..|:..||.|.|..|..|..::..:..
Zfish    67 EKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGSVS 131

  Fly   174 YSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 238
            ||:||||.:||:||.|.:.||:|:.|.|:.:||.||||.||||||||||||||||.|:|....||
Zfish   132 YSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFL 196

  Fly   239 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 303
            |:....:|..:||:.|:|:|:.|..|::..|.|||:||:||||.:||....:.|||:|||::|||
Zfish   197 KVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 261

  Fly   304 NQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDV 368
            ||:|||.:...:|:|.||||.|.|||||||.|||||||....|||:||..|::|||..:....|:
Zfish   262 NQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDI 326

  Fly   369 NFEELSRSTDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQAKKK--ANLNY 426
            ::|.:.:.:|.||||..:.||.||||.|:|.....||.||||.|:.:|...||  :.|:|
Zfish   327 DYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHEYVTQEDFMKAVRKVADSKKLESKLDY 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 159/376 (42%)
psmc6NP_001003832.1 RPT1 1..387 CDD:224143 163/385 (42%)
AAA 171..303 CDD:278434 76/131 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1222
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.