DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and Psmc5

DIOPT Version :10

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_032976.1 Gene:Psmc5 / 19184 MGIID:105047 Length:406 Species:Mus musculus


Alignment Length:412 Identity:181/412 - (43%)
Similarity:250/412 - (60%) Gaps:34/412 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EDGEESLGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIRITHEIQAQ----NEKIKDNTEKIKVN 72
            |:|:...|.....:|.   :...:|:.|:    ||:.:|   .:|||    |.|::...|::::.
Mouse    12 EEGKAGSGLRQYYLSK---IEELQLIVND----KSQNLR---RLQAQRNELNAKVRLLREELQLL 66

  Fly    73 KTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPG 137
            :.....|..|:..:|                    .|..::|......:.:.|...:|...:.|.
Mouse    67 QEQGSYVGEVVRAMD--------------------KKKVLVKVHPEGKFVVDVDKNIDINDVTPN 111

  Fly   138 DLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFK 202
            ..|.:..|||.:.:.||.:.|..|..|.|::.|...|..||||||||:|:.|.:.||:.|.|.|:
Mouse   112 CRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFE 176

  Fly   203 NLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267
            .|||..||||||||||||||||||||.|..|..||::::|.:|||.|||:||::||:.|.:|:|.
Mouse   177 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

  Fly   268 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALL 332
            ||:|||:||:|:||:.|.:....||.||||||||||||||||.:|.:||||.||||:||||.|||
Mouse   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 306

  Fly   333 RSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIAL 397
            |.||:|||||||.||||||..|::|||||||::..:|..:::......:||:.|.||.||||.||
Mouse   307 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYAL 371

  Fly   398 RRSANSVTHEDFMDAIMEVQAK 419
            |.....||.|||..|:.:|..|
Mouse   372 RERRVHVTQEDFEMAVAKVMQK 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 PRK03992 28..421 CDD:179699 177/396 (45%)
Psmc5NP_032976.1 PRK03992 24..400 CDD:179699 178/400 (45%)
May mediate interaction with PRPF9. /evidence=ECO:0000269|PubMed:17349974 186..406 125/208 (60%)

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