DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpt5 and Psmc2

DIOPT Version :9

Sequence 1:NP_524464.1 Gene:Rpt5 / 42805 FlyBaseID:FBgn0028684 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001355590.1 Gene:Psmc2 / 19181 MGIID:109555 Length:433 Species:Mus musculus


Alignment Length:421 Identity:164/421 - (38%)
Similarity:242/421 - (57%) Gaps:46/421 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LMDNEIKIMKS--------EVIRITHEIQAQNEKIKDNT-------------------EKIKVNK 73
            |.:.:|.::|:        ::.::..:||...:||.:.|                   :|..:..
Mouse    25 LDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQS 89

  Fly    74 TLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGD 138
            ..|..|:...::::.|.::.:                .:|.......:.:.:...|....::.|.
Mouse    90 EQPLQVARCTKIINADSEDPK----------------YIINVKQFAKFVVDLSDQVAPTDIEEGM 138

  Fly   139 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKN 203
            .|||:::.|.|...||.:.|..|..|:|:|:|...|||:||..:||::|.|.|..|:.|.|:|.|
Mouse   139 RVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVN 203

  Fly   204 LGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 268
            |||.|||||||:|||||||||.|||.|.:|.:.|:::.|.:|||.::|:||::||:.|.:|:.|.
Mouse   204 LGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 268

  Fly   269 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLR 333
            ..:||.||:||||..|||....||.|||||||||:||||||....:|||:.||||.|.|||||:|
Mouse   269 ACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMR 333

  Fly   334 SGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALR 398
            .|||||||||..|:.|.|..|.:||:|.|:|..|:.||.|:|...:..||:.::||.||||.|:|
Mouse   334 PGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 398

  Fly   399 RSANSVTHEDFMDAIMEV---QAKKKANLNY 426
            ......|.:||::|:.:|   .||..|...|
Mouse   399 ARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpt5NP_524464.1 RPT1 33..421 CDD:224143 162/414 (39%)
Psmc2NP_001355590.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
RPT1 23..430 CDD:224143 164/421 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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